bgruening/docker-recipes bgruening/docker-recipes

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    24
  • Rank 986,245 (Top 20 %)
  • Language
    Shell
  • License
    MIT License
  • Created over 10 years ago
  • Updated over 1 year ago
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bgruening/docker-recipes
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Repository Details

🐳 Dockerfiles to build Galaxy images

More Repositories

1

docker-galaxy-stable

πŸ³πŸ“ŠπŸ“š Docker Images tracking the stable Galaxy releases.
Shell
225
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2

galaxytools

πŸ”¬πŸ“š Galaxy Tool wrappers
HTML
116
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3

awesome-ukraine-support

A list of resources and inititive to help the Ukraine
48
star
4

conda_r_skeleton_helper

Cleaning up Conda r-packages
Python
43
star
5

galaxy-rna-workbench

Galaxy RNA workbench
HTML
38
star
6

galaxy-ipython

πŸ”¬πŸ“š IPython Integration into Galaxy
Mako
32
star
7

docker-jupyter-notebook

🐳 πŸ”¬ πŸ“š Jupyter running in a docker container. This image can be used to integrate Jupyter into Galaxy
Python
30
star
8

coding_for_big_data

X things you should take into consideration if you code for big data analysis
23
star
9

docker-ipython-notebook

🐳 πŸ”¬ πŸ“š IPython running in a docker container. This image can be used to integrate IPython into Galaxy
Python
17
star
10

docker-galaxy-imaging

🐳 Galaxy Docker repository with Imaging tools (Galaxy Imaging flavour)
Dockerfile
12
star
11

galaxy-tricks

Useful tricks and tipps for Galaxy users
11
star
12

docker-galaxy-blast

🐳 Galaxy Docker repository with NCBI Blast tools (Galaxy Blast flavour)
6
star
13

methtools

tools for the processing of genome-wide bisulfite sequencing data
Python
5
star
14

rbc_docs

RBC de.NBI documents
4
star
15

docker-busybox-bash

Minimal Docker Container with bash
Shell
4
star
16

docker-galaxy-ngs-preprocessing

πŸ³πŸ“ŠπŸ“š Docker Images for NGS data preprocessing
Dockerfile
3
star
17

test-data-registry

List, collect and reference good test datasets for tool and workflow testing
2
star
18

docker-galaxy-epigenetics

πŸ³πŸ“ŠπŸ“š Docker Images for epigenetics data analysis
2
star
19

galaxy-rna-seq

πŸ³πŸ“ŠπŸ“š Galaxy Docker Image to analyse RNA-Seq data
Dockerfile
2
star
20

docker-galaxy-chemicaltoolbox

πŸ“šπŸ³ Galaxy flavor for Cheminformatics
Dockerfile
2
star
21

pgchem_tigress

Pgchem::tigress is the chemoinformatics extension to the PostgreSQL DBMS. It enables PostgreSQL to handle molecules through SQL statements.
C++
2
star
22

docker-galaxy-exome-seq

Galaxy Docker Image for Exome sequencing
Dockerfile
2
star
23

gxtool_mapping

Python
2
star
24

argparse2galaxy

Convert a python argparse defintion in a Galaxy Tool XML
Python
2
star
25

blobtoolkit-server

Blobtoolkit server and viewer - used as interactive tools in Galaxy
Dockerfile
1
star
26

gsh

Galaxy Shell
Python
1
star
27

freiburg

Social bug tracker for cities, states and countries
1
star
28

RNAcommender

genome-wide recommendation of RNA-protein interactions
Python
1
star
29

silicos-it_store

Storage for silicos-it tarballs
1
star
30

download_store

universal storage
Python
1
star
31

docker-galaxy-phylogenetics

πŸ³πŸ“ŠπŸ“š Docker Images for molecular phylogenetics
Dockerfile
1
star
32

example_zarr

example OME-ZARR
Jupyter Notebook
1
star
33

where_does_my_trash_need_to_go

Trash sorting guide
1
star
34

docker-galaxy-ploen

Special Galaxy Docker Image for the MPI for Evolutionary Biology
1
star
35

notebooks

πŸ“š Collection of IPython notebooks
Jupyter Notebook
1
star
36

galaxy-rna-structural-analysis

Galaxy flavor for RNA structural analysis
Dockerfile
1
star
37

ipython-galaxy-publication

Our initial proposal for a Docker/IPython/Galaxy paper
TeX
1
star
38

presentations

πŸ“š talks, presentations and ideas
JavaScript
1
star
39

docker-odv

Docker image for ODV
Dockerfile
1
star