berenslab/abc-ribbon berenslab/abc-ribbon

  • Stars
    star
    2
  • Language
    Jupyter Notebook
  • License
    GNU General Publi...
  • Created about 5 years ago
  • Updated almost 5 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
berenslab/abc-ribbon
github

berenslab

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

More Repositories

1

pubmed-landscape

The landscape of biomedical research
Jupyter Notebook
113
star
2

rna-seq-tsne

The art of using t-SNE for single-cell transcriptomics
Jupyter Notebook
113
star
3

t-simcne

Unsupervised visualization of image datasets using contrastive learning
Python
84
star
4

neural_data_science

Contains programming labs and lecture notes for the lecture "Neural Data Science"
Jupyter Notebook
79
star
5

uneye

Deep neural network for eye movement detection
Jupyter Notebook
68
star
6

contrastive-ne

Contrastive neighbor embeddings
Jupyter Notebook
51
star
7

umi-normalization

Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Genome Biology
Jupyter Notebook
34
star
8

MorphoPy

Jupyter Notebook
34
star
9

ne-spectrum

Attraction-Repulsion Spectrum in Neighbor Embeddings
Python
25
star
10

RFEst

A Python 3 toolbox for neural receptive field estimation using splines and Gaussian priors.
Python
24
star
11

mini-atlas

Phenotypic variation of transcriptomic cell types in mouse motor cortex
Jupyter Notebook
16
star
12

patch-seq-rrr

Sparse reduced-rank regression
Jupyter Notebook
14
star
13

spikefinder_analysis

Analysis code for the results of the spikefinder challenge
Jupyter Notebook
11
star
14

ttaug-midl2018

Test-time Data Augmentation for Estimation of Heteroscedastic Aleatoric Uncertainty in Deep Neural Networks, MIDL 2018
Python
8
star
15

morphvae

MorphVAE: Generating Neural Morphologies from 3D-Walks
Jupyter Notebook
7
star
16

pubmed-tsne-iclr

Two-dimensional visualization of large document libraries using t-SNE
Jupyter Notebook
6
star
17

neuroprobnum

Probabilistic numerics for common neuroscience models.
Jupyter Notebook
5
star
18

ttaug-DR-uncertainty

Test-time Data Augmentation for Estimation of Heteroscedastic Aleatoric Uncertainty in Diabetic Retinopathy (DR) Detection via Deep Neural Networks
Jupyter Notebook
4
star
19

CBC_inference

Code etc. for CBC inference paper of Oesterle el al. 2020
C++
3
star
20

genderBagNets

Interpretable gender classification from retinal fundus images using BagNets
Jupyter Notebook
3
star
21

sBNN

A sparse bottleneck neural network to predict electrophysiological properties of neurons from their gene expression.
Jupyter Notebook
3
star
22

EphysExtraction

Code to extract electrophysiological parameters of neurons.
Jupyter Notebook
2
star
23

cone_colour_tuning

Jupyter Notebook
2
star
24

coding-guidelines

Collaboration guidelines and default configurations for common Github repositories.
Python
2
star
25

layer4

Analysis code for the L4 paper
Jupyter Notebook
2
star
26

ubuntu_quick_setup

Shell
2
star
27

hh_sbi

Jupyter Notebook
1
star
28

morphology-benchmark

Jupyter Notebook
1
star
29

pr_bc_connectivity

Notebooks for Behrens et al.
Jupyter Notebook
1
star
30

bc_network

Jupyter Notebook
1
star
31

bayesian_2p_pipeline

Code for the manuscript "Bayesian hypothesis testing and experimental design for two-photon imaging data"
Jupyter Notebook
1
star