berenslab/CBC_inference berenslab/CBC_inference

  • Stars
    star
    3
  • Rank 3,963,521 (Top 79 %)
  • Language
    C++
  • License
    GNU General Publi...
  • Created over 4 years ago
  • Updated about 4 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
berenslab/CBC_inference
github

berenslab

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Code etc. for CBC inference paper of Oesterle el al. 2020

More Repositories

1

pubmed-landscape

The landscape of biomedical research
Jupyter Notebook
113
star
2

rna-seq-tsne

The art of using t-SNE for single-cell transcriptomics
Jupyter Notebook
113
star
3

t-simcne

Unsupervised visualization of image datasets using contrastive learning
Python
84
star
4

neural_data_science

Contains programming labs and lecture notes for the lecture "Neural Data Science"
Jupyter Notebook
79
star
5

uneye

Deep neural network for eye movement detection
Jupyter Notebook
68
star
6

contrastive-ne

Contrastive neighbor embeddings
Jupyter Notebook
51
star
7

umi-normalization

Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Genome Biology
Jupyter Notebook
34
star
8

MorphoPy

Jupyter Notebook
34
star
9

ne-spectrum

Attraction-Repulsion Spectrum in Neighbor Embeddings
Python
25
star
10

RFEst

A Python 3 toolbox for neural receptive field estimation using splines and Gaussian priors.
Python
24
star
11

mini-atlas

Phenotypic variation of transcriptomic cell types in mouse motor cortex
Jupyter Notebook
16
star
12

patch-seq-rrr

Sparse reduced-rank regression
Jupyter Notebook
14
star
13

spikefinder_analysis

Analysis code for the results of the spikefinder challenge
Jupyter Notebook
11
star
14

ttaug-midl2018

Test-time Data Augmentation for Estimation of Heteroscedastic Aleatoric Uncertainty in Deep Neural Networks, MIDL 2018
Python
8
star
15

morphvae

MorphVAE: Generating Neural Morphologies from 3D-Walks
Jupyter Notebook
7
star
16

pubmed-tsne-iclr

Two-dimensional visualization of large document libraries using t-SNE
Jupyter Notebook
6
star
17

neuroprobnum

Probabilistic numerics for common neuroscience models.
Jupyter Notebook
5
star
18

ttaug-DR-uncertainty

Test-time Data Augmentation for Estimation of Heteroscedastic Aleatoric Uncertainty in Diabetic Retinopathy (DR) Detection via Deep Neural Networks
Jupyter Notebook
4
star
19

genderBagNets

Interpretable gender classification from retinal fundus images using BagNets
Jupyter Notebook
3
star
20

sBNN

A sparse bottleneck neural network to predict electrophysiological properties of neurons from their gene expression.
Jupyter Notebook
3
star
21

EphysExtraction

Code to extract electrophysiological parameters of neurons.
Jupyter Notebook
2
star
22

cone_colour_tuning

Jupyter Notebook
2
star
23

coding-guidelines

Collaboration guidelines and default configurations for common Github repositories.
Python
2
star
24

abc-ribbon

Jupyter Notebook
2
star
25

layer4

Analysis code for the L4 paper
Jupyter Notebook
2
star
26

ubuntu_quick_setup

Shell
2
star
27

hh_sbi

Jupyter Notebook
1
star
28

morphology-benchmark

Jupyter Notebook
1
star
29

pr_bc_connectivity

Notebooks for Behrens et al.
Jupyter Notebook
1
star
30

bc_network

Jupyter Notebook
1
star
31

bayesian_2p_pipeline

Code for the manuscript "Bayesian hypothesis testing and experimental design for two-photon imaging data"
Jupyter Notebook
1
star