benfulcher/ResearchResources

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Created almost 5 years ago
Updated 4 months ago

benfulcher/ResearchResources

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Resources for reseachers

hctsa

Highly comparative time-series analysis

hctsa_python

Initial attempt to incorporate some time-series analysis features from hctsa into python land

hctsaTutorial_BonnEEG

hctsa tutorial using the five-class Bonn EEG dataset

TimeSeriesGeneration

Generating time series from a range of dynamical systems

GeneCategoryEnrichmentAnalysis

Toolbox for performing gene set enrichment analysis in Matlab (including ensemble enrichment)

mouseGradients

Code to reproduce analyses of mouse cortical gradients

hctsa_phenotypingFly

hctsaDocumentation

gitbook documentation for hctsa

AllenSDK

Workflow for retrieving spatial gene-expression data from the Allen Institute's Mouse Brain Atlas

CNS2020_hctsaTutorial

CNS 2020 tutorial for hctsa

hctsaAnalysisPython

Code for running python analyses of hctsa data

GCEA_FalsePositives

Analysis of statistical biases in Gene Set Enrichment Analysis applied to transcriptomic atlas data

hctsa_phenotypingWorm

Running hctsa analysis on movement speed data of five strains of worm

Empirical1000_LowDimProj

Low-dimensional projection of diverse empirical time-series data

Matlab_mySQL

Tools for connecting to mySQL databases from Matlab

distributed_hctsa

Running hctsa on a cluster (pbs or slurm)

mouseStructuralConnectivity

Code for computing interareal axonal connectivity in mouse

hctsa_DREADD