Discover bendmorris/ncbi_taxonomy Open Source project

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Language
Python
License
MIT License
Created over 11 years ago
Updated about 11 years ago

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Build a Newick tree from the NCBI taxonomy

static-python

A fork of cpython that supports building a static interpreter and true standalone executables

Python

188

spinehaxe

Spine runtime for Haxe 3. Based on current AS3/libgdx runtimes.

Haxe

hxpk

Haxe port of the libGDX Texture Packer

Haxe

scotch

The Scotch programming language

Haskell

hide-n-stab

Multiplayer stealth action game. Created in 48 hours for Ludum Dare 29, "beneath the surface."

Haxe

krit-kit

[deprecated] 2D game engine, written in Kit, using SDL/OpenGL. See more recent C++ version at https://github.com/bendmorris/krit

Kit

taxiphy

Common repository for scripts to generate trees from taxonomies. Currently includes ITIS, NCBI, and GBIF.

Python

krit

2D game engine in C++. Sharing but this is mostly for personal use - once a project has been released I'll update the documentation and make it more user friendly :) Bear with me!

C++

staticdata

Haxe library for managing rich static data

Haxe

haxepop

An enhanced fork of HaxePunk 2.6

Haxe

python-phylopic

Simple Python phylopic.org wrapper

Python

pybioclim

A Python interface to BIOCLIM climate data. Data files included in package.

python-geocode

Simple Python geocoding module using the Google Maps API with automatic result caching

Python

waxwing

JS-to-JS optimizing compiler

TypeScript

pyj2d

Pygame for Jython. Originally forked from James Garnon: http://gatc.ca/projects/pyj2d/

Python

neskit

NES emulator written in Kit

Kit

pyhx

Python import hook for Haxe

Python

beaver

Beaver, an experimental semantic programming language for processing data in the form of triple graphs.

Python

hxbehave

Haxe behavior trees

Haxe

gun-violence

Do higher rates of gun ownership predict higher rates of gun violence?

Python

hxconf

Haxe INI-style sectioned config file parser

Haxe

swc_databases

Material from Software Carpentry SQL databases session. Originally developed for U. Virginia workshop Mar 7-8 2013.

Python

pphp

PHP AST transformation extension

Shell

rdf-treestore

A phylogenetic tree store with an RDF backend

Python

hungryhungryspiders

Hungry Hungry Spiders! (LD45)

Haxe

tax_resolve

Some wrapper functions for acquiring standardized forms of taxonomic names.

Python

lscolumns

pretty-print columns of data

Python

as3hx

Convert AS3 code to Haxe. Updated to work on Haxe 3.

Nemerle

jython-pgu

A fork of the Python Game Utilities refactored to run on Jython using pyj2d

Python

neon_portal

Django web app for data entry into the dodobase system.

Python

markdown-doc

A template for writing articles, proposals, etc. in Markdown with pandoc and bibtex

2013-12-12-glasgow

Software Carpentry workshop in Glasgow, 12/12/2013

Python

pagefile

Haxe storage paging system

Haxe

hxgit

Simple way to build a project with Git version info

Haxe

grumpkin

Asynchronous Haxe server framework

Haxe

inkscape_split

Split Inkscape SVG into one PNG per layer

Python

biophylo

Phylogenetic computing library for Haskell

Haskell

streets-of-style

Ludum Dare 41: Combine 2 Incompatible Genres

Haxe

haxe-redis

Haxe

phylolabel

Automatic labeling of higher-order taxa in a phylogeny using a reference taxonomy

Python

bmfg

CLI BMFont-compatible BitMap Font Generator

Python

autoesg2

Tool for downloading CMIP5 data from ESG server

Python

alpha_bandaid.py

Stops alpha bleeding by filling transparent pixels with the color value of the closest visible pixel.

Python

thegarden

Ludum Dare 30, "Connected Worlds"

Haxe

water_maker

Make an animated water spritemap from a square water tile.

Python

bbs_cooccurrence

Python

rubenwriter

A fullscreen app for Ruben to type letters and numbers on my laptop without being able to minimize, quit, or do anything else.

Python

rust-hangman

Hangman, in Rust, for fun

Rust

make_tutorial

SWC Introduction to Make

Python

mapreduce-hw

Learning how to use mapreduce on hadoop

Python

krit-toolchain

Dependencies and headers

HaxePunk-layout

Simple layout and UI library for HaxePunk

Haxe

odum

Final project for course on Big Data (Information and Library Science, UNC) - uses MapReduce to find similar studies from social science data

Python

autoesg

Open source tool for downloading climate data from the Earth System Grid automatically.

Python

cql

Parser for the Contextual Query Language (CQL)

Python

pssat

Protein Secondary Structure Alignment Tool - performs a probabilistic alignment of predicted secondary structures, and generates HTML output. Written in Haskell.

Haskell

rosalind

rosalind.info solutions

Python

pyscotch

Implementation of Scotch programming language in Python

Python

itis_taxonomy

Build a Newick tree from the ITIS taxonomy

Python

LD37

Ludum Dare 37 48 hour competition - "One Room"

Haxe

haxepop-ui

A simple, flexible UI framework for the Haxepop game engine

Haxe

spine-krit

Kit/Krit Spine renderer

Kit

catalyst-demo

JavaScript

fia_spatial_diversity

Quantifying the contributions of selection, dispersal, and drift to spatial diversity of tree communities.

Python

soupdb

WIP

Rust

tile_padder

Add padding + alpha color correction to tilesets to avoid bleeding and tearing

Python

swc-materials

SWC teaching materials

Python

adelaide_swc

Python

ache

An asset pipeline automation tool.

Python

richness_scale

Python

family-twine

Family Twine projects

HTML

mgrast

Simple tool for downloading lots of metagenomes from MG-RAST for microbial macroecology

bendmorris.github.io

swc-shell

leek

highly available distributed celerybeat scheduler

Python

2016-dem-primary-analysis

Python

aur

Download, build, and install packages from the Arch User Repository (AUR)

Shell

Gitview

js widget to list github repositories

JavaScript

waxwing-phylogeography

Phylogeography of cedar and bohemian waxwings, and comparison to silky flycatchers. From a class project.

Python

picoides-phylogeography

Files from a project that I started and set aside - might be useful in the future

Python

bendmorris/ncbi_taxonomy

bendmorris

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