aqlaboratory/hsm

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Jupyter Notebook
License
MIT License
Created almost 5 years ago
Updated over 1 year ago

aqlaboratory/hsm

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Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."

openfold

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

proteinnet

Standardized data set for machine learning of protein structure

rgn

Recurrent Geometric Networks for end-to-end differentiable learning of protein structure

genie

De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds

rgn2

genie2

Protein structure diffusion model for unconditional protein generation and motif scaffolding

pnerf

insilico_design_pipeline

In-silico design pipeline for evaluating protein structure diffusion models.

sh2-cancer

MSM model of SH2-phosphoprotein cancer networks

hsm-web

Website associated with the "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."

hth-dna-db

Database of HTH-DNA complexes