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orthomcl-pipeline
Automates running of OrthoMCL software from http://orthomcl.org/common/downloads/software/v2.0/microbial-informatics-2014
Microbial Whole Genome Sequence data analysis labs for 2014genomics-data-index
Indexes genomes using SNVs, MLST, or kmers for rapid querying, clustering, and visualization.galaxy-hackathon-2014
core-phylogenomics
Pipeline for identifying core SNPs and building a phylogenetic treenf-core-assemblyexample
snvphyl-validations
Scripts and steps taken for validation tests on SNVPhyl.nf-core-genomicnomenclature
snvphyl-galaxy
nf-core-mlstprofiler
nf-core-pathoidentification
comp7944-project
Project on visualizing association rules extracted from covid-19 data.assembly-nf
snvphyl-asm-ngs-2015
SNVPhyl ASM NGS 2015 software challenge resultsffp-3.19-custom
Modifications to http://sourceforge.net/projects/ffp-phylogeny/ 3.19.phylip-custom
Customized phylip based on 3.695core-phylogenomics-tutorial
A set of tutorials for the core phylogenomics pipeline.assembly-galaxy
ggtree-tutorial
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