andersen-lab/zika-genomics

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andersen-lab/zika-genomics

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Zika virus genomics

Freyja

Depth-weighted De-Mixing

avian-influenza

Consensus sequences for U.S. H5N1 clade 2.3.4.4b

bjorn

HCoV-19-Genomics

SARS-CoV-2 genomics

SARS-CoV-2_WasteWater_San-Diego

zika-epidemiology

Zika Epidemiology - Case Numbers

paper_2021_early-b117-usa

zika-pipeline

SARS-CoV-2_SGTF_San-Diego

Freyja-data

Previous versions of Freyja barcodes and metadata files

SARS-CoV-2_Evolution

Freyja-SRA

paper_2018_primalseq-ivar

Jupyter Notebook

project_2023_SARS-CoV-2_Connectivity

Jupyter Notebook

wnv-phylogeography

Preliminary west nile virus phylogeography analysis in California

ebola-drc-epidemiology

Repo for epidemiological data for the ongoing Ebola outbreak in the DRC

hMPXV-1_Nigeria

Jupyter Notebook

Cryptic-Variants

west-nile-genomics-wnv4k

West Nile virus genomic data produced as part of the WestNile 4K Project

lassa-ebola-hla

HLA Genotype Sequencing of Hemorrhagic Fever Survivors using Illumina TruSight HLA v2 Sequencing Panel

SARS-CoV-1_Evolution

viral-sequence-analysis

mosquito-metagenomics

paper_2020_new-orleans-hcov-genomics

hCoV19-sitrep

bat-metagenomics

HCoV-19-Genomics-Nextstrain

Repo for local NextStrain build

paper_2022_huanan-market