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Freyja
Depth-weighted De-Mixingavian-influenza
Consensus sequences for U.S. H5N1 clade 2.3.4.4bbjorn
HCoV-19-Genomics
SARS-CoV-2 genomicsSARS-CoV-2_WasteWater_San-Diego
zika-epidemiology
Zika Epidemiology - Case Numberszika-genomics
Zika virus genomicspaper_2021_early-b117-usa
zika-pipeline
SARS-CoV-2_SGTF_San-Diego
Freyja-data
Previous versions of Freyja barcodes and metadata filesSARS-CoV-2_Evolution
Freyja-SRA
paper_2018_primalseq-ivar
project_2023_SARS-CoV-2_Connectivity
wnv-phylogeography
Preliminary west nile virus phylogeography analysis in Californiaebola-drc-epidemiology
Repo for epidemiological data for the ongoing Ebola outbreak in the DRChMPXV-1_Nigeria
Cryptic-Variants
west-nile-genomics-wnv4k
West Nile virus genomic data produced as part of the WestNile 4K Projectlassa-ebola-hla
HLA Genotype Sequencing of Hemorrhagic Fever Survivors using Illumina TruSight HLA v2 Sequencing PanelSARS-CoV-1_Evolution
viral-sequence-analysis
mosquito-metagenomics
hCoV19-sitrep
bat-metagenomics
HCoV-19-Genomics-Nextstrain
Repo for local NextStrain buildpaper_2022_huanan-market
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