There are no reviews yet. Be the first to send feedback to the community and the maintainers!
InstaLooter
Another API-less Instagram pictures and videos downloader.ffpb
A progress bar for ffmpeg. Yay !pronto
A Python frontend to (Open Biomedical) Ontologies.pyrodigal
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!pyhmmer
Cython bindings and Python interface to HMMER3.fs.sshfs
Pyfilesystem2 over SSH using paramikorich-msa
A Rich renderable for viewing Multiple Sequence Alignments in the terminal.peptides.py
Physicochemical properties, indices and descriptors for amino-acid sequences.lightmotif
A lightweight platform-accelerated library for biological motif scanning using position weight matrices.fs.smbfs
Pyfilesystem2 over SMB using pysmbpyfamsa
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.mini3di
A NumPy port of the foldseek code for encoding protein structures to 3di.pyskani
PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.blanket
A simple Rust macro to derive blanket implementations for your traits.pytrimal
Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!pyfastani
Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.pymuscle5
Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.orthoani
A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.pyrodigal-gv
A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.moclo
Modular cloning simulation with the MoClo framework in Pythoniocursor
A zero-copy file-like wrapper for Python byte buffers, inspired by Rust's std::io::Cursor.gb-io.py
A Python interface to gb-io, a fast GenBank parser written in Rust.cksfv.rs
A 10x faster drop-in reimplementation of cksfv using Rust and the crc32fast crate.textwrap-macros
Simple procedural macros to use textwrap utilities at compile time.pymemesuite
Cython bindings and Python interface to the MEME suite, a collection of tools for the analysis of sequence motifs.pysylph
PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.uniprot.rs
Rust data structures and parser for the Uniprot database(s).thunar-torrent-property
A small thunar extension displaying the metadata in a torrent file.jinja2-fsloader
A Jinja2 template loader using PyFilesystem2.nanoset.py
A memory-optimized wrapper for Python sets likely to be empty.packageurl.rs
Rust implementation of the Package URL specification.pyopal
Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.pubchem.rs
Rust data structures and client for the PubChem REST APIfs.expose
scihub-pubmed-userscript
A GreaseMonkey userscript to add a Full Text Link button redirecting to Sci-Hub on PubMed article pages.scoring-matrices
Dependency free, Cython-compatible scoring matrices to use with biological sequences.pyjess
Cython bindings and Python interface to Jess, a 3D template matching software for protein structures.torch-treecrf
A PyTorch implementation of Tree-structured Conditional Random Fields.pruefung
Redundancy checks in pure Rustnafcodec
Rust coder/decoder for Nucleotide Archival Format (NAF) files.lapucelle-textures
A PPSSPP texture pack for La Pucelle Ragnarok (english patched)proteinogenic
Chemical structure generation for protein sequences as SMILES string.flips.rs
Rust bindings to Flips, the Floating IPS patcher.opticaldisc
Read optical media filesystems with Rustpyswrd
Cython bindings and Python interface to SWORD (Smith Waterman On Reduced Database), a heuristic method for fast database search.kmachine
A toy compiler that produces Kappa code from Counter Machine instructions.embedded-picofont
The PICO-8 font to use with embedded-graphics.annotate.Snakefile
A Snakemake pipeline to copy annotations between GenBank filesdiced
A Rust reimplementation of the MinCED method for identifying CRISPRs in full or assembled genomes.smatrix
Not the slurm job dispatcher you need, but the one you deserve.pytantan
Cython bindings and Python interface to Tantan, a fast method for identifying repeats in DNA and protein sequences.rlinalg
Linear Algebra routines for Python as implemented in the R language.Love Open Source and this site? Check out how you can help us