alevchuk/bio-makefile

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Created over 15 years ago
Updated over 15 years ago

alevchuk/bio-makefile

alevchuk

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Conventions in my bioinformatics computations

vim-clutch

A hardware pedal for improved text editing in Vim

pairwise-alignment-in-python

Pairwise string alignment in Python (Needleman-Wunsch and Smith-Waterman algorithms)

minibank

Manual for building a Lightning Network node on RasPi hardware from scratch

memtop

memtop - Like top and iotop but for memory and with shared memory pmap accounting

pi-mastodon

Mastodon on a Pi via Tor

pstm

ps time machine

cellwall

Cellwall (UCR CWN) - Data processing and web-interface

uniprot-stats-history

Histroical Stats of Uniprot (Statistics Archive) See link directly bellow this text.

ms

MS thesis - improving multiple alignments by removing sequences

mash

mash - Multiple Alignment Score in HTML

hclust-fasta

Blast all-against-all and Hierachical clustering of protein sequences in FASTA

finding-the-sequence-of-a-domain

Answer to a Biostars.org question

kmercount-classifier

Shuffled or Real? Classification of protein sequences by using k-mer counts.

bcvss

Body camera video storage system

simplest-task-manager

A very simple human task management

nfsmon

NFS performatnce monitor

lindy-effect

Statistical testing of the Lindy effect

pfam-clust

Find clusters of protein sequences that have the same sequence of Pfam domains

freezefsfreezer

freeze those who freeze the fs

fasta-to-mcl-to-spreadsheet

Takes multiple FASTA files: Species A, Species B, ... Clusters with Blast and MCL. Outputs a spreadsheet table showing which species belong to which clusters.

torque-ameliorators

Ruby scripts for interigating cluster state via Troque