acorg/acmacs-build

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Language Makefile
License
MIT License
Created about 7 years ago
Updated over 1 year ago

acorg/acmacs-build

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slurm-pipeline

A Python class for scheduling SLURM jobs

Racmacs

Racmacs R package for performing antigenic cartography

dark-matter

Virus discovery

beast2-xml

Python code to generate BEAST2 XML files

figtree-recolor

A script to re-color a FigTree saved Nexus file

ncbi-taxonomy-database

How to make a mysql or sqlite database of NCBI taxonomy data for use with the dark-matter lineage fetcher

accourse2019

Repository for course materials for the antigenic cartography and antibody landscapes course 2019

pymds

Metric multidimensional scaling in python

gor4

Python class providing an interface to GOR4 amino acid structure prediction C code

acmacs-py

Python module for acmacs

simple-slurm-loop

Simple shell scripts to run a looping job on SLURM

ablandscapes

An R package for making antibody landscapes

light-matter

The lighter side of the dark side

mapping_SARS-CoV-2_antigenic_relationships_and_serological_responses

acutilsLite

cdplot

BLAST hit plotter for CD

py3seq

Python wrapper for the 3seq recombination detection algorithm

parvo-2018

FASTA alignments and BEAST2 XML files for the PNAS paper "Ancient human parvovirus B19 in Eurasia reveals its long-term association with humans"

roessler_netzl_et_al2023

This repository contains the code for the manuscript "Characterizing SARS-CoV-2 neutralization profiles after bivalent boosting using antigenic cartography" by Annika Rössler, Antonia Netzl, et. al., 2023

2018-cambridge-python-course

Notes and code from a May 2018 course on Python and the shell

lispmds

acmacs.r

Acmacs package for R