abs-tudelft/variant-calling-at-scale

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Language
Python
License
Apache License 2.0
Created almost 4 years ago
Updated almost 3 years ago

abs-tudelft/variant-calling-at-scale

abs-tudelft

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Scalable and High Performance Variant Calling on Cluster Environments

fletcher

Fletcher: A framework to integrate FPGA accelerators with Apache Arrow

sbd

Course material for Supercomputing for Big Data

vhdeps

VHDL dependency analyzer

ArrowSAM

Genomics datastructures using Apache Arrow

vhdre

Generator for VHDL regular expression matchers

tydi

Tydi: an open specification for complex data structures over hardware streams

Tydi-Chisel

vhsnunzip

Hardware Snappy decompressor

vhdmmio

VHDL code generator for AXI4-lite register files

vhlib

Package of miscellaneous VHDL libraries

wiki-search-alveo

fletcher-example-regexp

Regular expression matching example with Fletcher

cerata

Cerata: a Hardware Construction Library written in C++17

arrow

cmake-modules

Collection of CMake modules

fletcher-example-kmeans

K-Means example using Fletcher

templates

Repository for storing code style info and templates

gen-mpi

MPI-based Cluster Scalable Variant Calling for Short/Long Reads Sequencing Data

Tydi-tools

A docker image with all Tydi tools included.

FletcherFiltering

SQL to HLS hardware filtering for Flechter streams

vivado-impl-scripts

Scripts that help to automate trying out implementation strategies and constraints, incremental optimization, and stuff like routing critical nets first

time-to-fly-high

Benchmarking Arrow Flight - A wire-speed protocol for data transfer, querying and microservices