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spades
SPAdes Genome Assemblerquast
Genome assembly evaluation toolIsoQuant
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)viralVerify
viralVerify: viral contig verification toolTandemTools
Tool for assessing/improving assembly quality in extra-long tandem repeatsstringdecomposer
Tool for decomposition centromeric assemblies and long reads into monomersVerityMap
npdtools
Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry datarnaquast
Quality assessment of de novo transcriptome assemblies from RNA-Seq datametaGT
Pipeline for metagenome and metatranscriptome joint assemblyplasmidVerify
plasmidVerify: plasmid contig verification toolnerpa
HORmon
graphamr
Antibiotic prediction from metagenome assembly graphsorf-search
ORF search on assembly graphsquast-website
Django web interface for Quast assembly assessment tool: https://github.com/ablab/quastTagFinder
external-tools
quast_snakemake
y-tools
platform_comparison
Comparing Platformsbasespace_gatk_app
Repo for creating BaseSpace Appscovid19_variation_analysis
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