ablab/nerpa ablab/nerpa

  • Stars
    star
    10
  • Rank 1,760,610 (Top 36 %)
  • Language
    C++
  • License
    Other
  • Created over 4 years ago
  • Updated 3 months ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
ablab/nerpa
github

ablab

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

More Repositories

1

spades

SPAdes Genome Assembler
C++
677
star
2

quast

Genome assembly evaluation tool
AMPL
367
star
3

IsoQuant

Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
Python
120
star
4

viralVerify

viralVerify: viral contig verification tool
Python
60
star
5

TandemTools

Tool for assessing/improving assembly quality in extra-long tandem repeats
C++
43
star
6

stringdecomposer

Tool for decomposition centromeric assemblies and long reads into monomers
C++
31
star
7

VerityMap

C++
27
star
8

npdtools

Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry data
22
star
9

viralComplete

viralComplete: BLAST-based viral completeness verification
Python
21
star
10

rnaquast

Quality assessment of de novo transcriptome assemblies from RNA-Seq data
Python
17
star
11

metaGT

Pipeline for metagenome and metatranscriptome joint assembly
Nextflow
15
star
12

plasmidVerify

plasmidVerify: plasmid contig verification tool
Python
11
star
13

HORmon

Python
8
star
14

graphamr

Antibiotic prediction from metagenome assembly graphs
Nextflow
8
star
15

orf-search

ORF search on assembly graphs
Python
5
star
16

TagFinder

Java
4
star
17

quast-website

Django web interface for Quast assembly assessment tool: https://github.com/ablab/quast
HTML
4
star
18

external-tools

C++
3
star
19

quast_snakemake

Python
3
star
20

y-tools

C++
3
star
21

platform_comparison

Comparing Platforms
Python
2
star
22

basespace_gatk_app

Repo for creating BaseSpace Apps
Python
1
star
23

covid19_variation_analysis

Python
1
star