ablab/external-tools

This repository has been archived on 23/Dec/2019
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Created over 12 years ago
Updated over 12 years ago

ablab/external-tools

ablab

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spades

SPAdes Genome Assembler

quast

Genome assembly evaluation tool

IsoQuant

Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)

viralVerify

viralVerify: viral contig verification tool

TandemTools

Tool for assessing/improving assembly quality in extra-long tandem repeats

stringdecomposer

Tool for decomposition centromeric assemblies and long reads into monomers

VerityMap

npdtools

Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry data

viralComplete

viralComplete: BLAST-based viral completeness verification

rnaquast

Quality assessment of de novo transcriptome assemblies from RNA-Seq data

metaGT

Pipeline for metagenome and metatranscriptome joint assembly

plasmidVerify

plasmidVerify: plasmid contig verification tool

nerpa

HORmon

graphamr

Antibiotic prediction from metagenome assembly graphs

orf-search

ORF search on assembly graphs

quast-website

Django web interface for Quast assembly assessment tool: https://github.com/ablab/quast

TagFinder

quast_snakemake

y-tools

platform_comparison

Comparing Platforms

basespace_gatk_app

Repo for creating BaseSpace Apps

covid19_variation_analysis