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hpcleap_dnds
Sliding window dN/dS vs. functional protein domain comparison tool. Given VectorBase gene id inputs it will aggregate various useful Bioinformatics information available, then allow the user to compare selective pressures acting along the protein sequence vs. an overlay of functional protein domain annotations.TelomereTimebomb
kaks_error_bars
A simple script and example data file to draw barplots of multiple protein's pairwise dN/dS values, with error bars!learn_ML
Templates and Examples of Machine Learning programs. Topics covered in README.vbdev
argonLJMD
HPCLEAP_SWE-MPI
Tsunami simulations in 3D (with 2D visual output showing +1D via colour).vigilab_intergeneShareGFF
(1) Parse in a GFF file, (2) Filter only rows matching a specific type (e.g. transcript), (3) Then print a new GFF file whose "start" and "end" fields are expanded to include intergenic regions whose sharing distribution differs according to pairwise strand orientations: (i) 1/3:2/3 ratio for tail:head (+,+) strands, (ii) 2/3:1/3 for head:tail strands (-,-), and (iii) 1/2:1/2 for head:head (-,+) and tail:tail (+,-) strandsJustAGaan
Playing with AIshpcleap_obp
hpcleap_gemm
hpcleap_malarVsNon
T-SNE_testing
Testing dimensionality reduction techniques useful for VB Expression map, turning into a 1D indexable vectorhpcleap_gpu
hpcleap_md
Molecular Dynamics simulation (HPC-LEAP workshop 1)hpcleap_ppi
Protein-protein interactions predicted between proteins of Anopheles gambiae, Plasmodium falciparum and between the proteins of the two specieshpcleap_neuro
Neuroscience practical excercises in HPC-LEAP Thematic workshop: Computational BiologySplinterBotPPI
Scrapes iPfam and Uniprot for co-complex protein-protein interactions in Anopheles gambiae and Plasmodium falciparum.lilGoth_data
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