There are no reviews yet. Be the first to send feedback to the community and the maintainers!
pycoQC
pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)NanoCount
EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2pycoMeth
DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasetsNanopolishComp
NanopolishComp is a Python3 package for downstream analyses of Nanopolish output filesMetaCompore
Metacompore is a snakemake pipeline running multiple RNA modifications detection tools for nanopore directRNA sequencingpycoSnake
pycoSnake is a neatly wrapped collection of snakemake workflows for analysing nanopore and Illumina sequencing dataChimera_Finder
These BASH script allow to extract chimeric pairs and chimeric reads from NGS data mixing 2 DNA referencesContaVect
Complete suite to analyse DNA contaminants of virus/vector preparation from NGS dataSekator
Multithreaded quality and adapter trimmer for PAIRED fastq files (Python2.7/Cython/C)pyBioTools
Collection of tools to manipulate Bioinformatic standard file format + Generic file related function collectionblastpy3
Simple and lightweight Python 3 wrapper module for NCBI BLAST+JupyterGenoViewer
JGV is a Python3 package for an embed genomic viewer in Jupyter notebookQuade
Demultiplexer for PAIRED fastq files based on index sequence and PHRED quality (pure python)MirStat
Simple tool to analyze miRNA QPCR datafastq_control_sampler
Generates control fastq files R1 and R2 from fasta reference sequencesIsFinder
IsFinder find virus insertion site in host genomic DNA from pair end NGS datapyFastq
Simple python 2.7 librarie to parse fastq files and handle illumina 1.8+ fastq sequencespyBioPlot
High level library for Python 3 containing functions to generate specific plot for NGS and other biology related datasets.RScripts
Contains misc data specific R-cran scriptspy_NGS_tools
Collection of undocumented and experimental python tools related to NDS dataBASH_NGS_Tools
Collection of simple NGS toolspyDNA
Collection of python 2.7 Utilities and Wrapper for DNA / NGS data manipulationDNA_photolitography_seq
Repository containing analyses and datasetsFast5Tools
Tools to manipulate Fast5 filespyScripts
Contains misc data specific python3 scriptsIsis
ISIS generates random insertion sites of a given viral DNA in an host DNA and output Fastq Filesnanocompore_paper_analyses
Analyses performed for the nanocompore paperversipy
Versatile version and medatada managment across the python packaging ecosystem with git integrationTargetPredict
Predict the targets of a short RNA in annotated features from genomic DNA, using BLAST, MIRANDA...Love Open Source and this site? Check out how you can help us