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CIRCexplorer2
circular RNA analysis toolsetCIRCexplorer
A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, Cell (2014), 159:134-147)CLEAR
direct comparison of circular and linear RNA expressionSCAPTURE
RADAR
RADAR is devised to detect and visualize all possible twelve-types of RNA editing events from RNA-seq datasets.RNAlight
a machine learning model to identify nucleotide features determining RNA subcellular localizationCDCscreen
Source code for the computational analysis of functional circular RNAs screening using the CRISPR-Cas13 systemCSI
Complementary Sequence Index (CSI)CIRCfinder
A pipeline to map junction reads for circular intronic RNAs (ciRNAs)bsRNA-seq-m5C
Pipeline for m5C calling.TERate
TERate is a computational pipeline to measure transcription elongation rates (TERs) with 4sUDRB-Seq.BEIDOU
Base/Prime Editor Induced DNA Off-target site identification Unified toolkitCFBI
CFBI is custom Perl and Shell scripts for base substitution and indel frequencies calculation.CIRCshapemapper
CIRCpseudo
Pipeline for circRNA-derived pseudogenesLove Open Source and this site? Check out how you can help us