XiaoTaoWang/HiC_pipeline

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Language
Python
License
GNU General Publi...
Created almost 10 years ago
Updated 8 months ago

XiaoTaoWang/HiC_pipeline

XiaoTaoWang

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An easy-to-use Hi-C data processing software supporting distributed computation.

HiCLift

A fast and efficient tool for converting chromatin interaction data between genome assemblies

NeoLoopFinder

A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes

EagleC

A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps

HiCPeaks

A Python implementation for BH-FDR and HiCCUPS

TADLib

A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains

StripeCaller

A toolkit for analyzing architectural stripes

domaincaller

A Python implementation of the original DI domain caller

Best-Labs-of-3D-Genome

Data and the co-authored network I extracted for lab selection in 3D genome research field

Project-Euler

Python solutions for Project Euler

calTADs

A hierarchical domain caller for Hi-C data based on a modified version of Directionality Index

Think-Complexity-Notes

Jupyter notebooks I created during reading Allen Downey's book Think Complexity

Jupyter Notebook

GradeSudoku

Python library for generating Sudoku puzzles of different grades

JustForFun

Little scripts written on a whim