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HiCLift
A fast and efficient tool for converting chromatin interaction data between genome assembliesNeoLoopFinder
A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomesHiC_pipeline
An easy-to-use Hi-C data processing software supporting distributed computation.HiCPeaks
A Python implementation for BH-FDR and HiCCUPSTADLib
A Library to Explore Chromatin Interaction Patterns for Topologically Associating DomainsStripeCaller
A toolkit for analyzing architectural stripesdomaincaller
A Python implementation of the original DI domain callerBest-Labs-of-3D-Genome
Data and the co-authored network I extracted for lab selection in 3D genome research fieldProject-Euler
Python solutions for Project EulercalTADs
A hierarchical domain caller for Hi-C data based on a modified version of Directionality IndexThink-Complexity-Notes
Jupyter notebooks I created during reading Allen Downey's book Think ComplexityGradeSudoku
Python library for generating Sudoku puzzles of different gradesJustForFun
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