WormBase/wormmine-bio-sources WormBase/wormmine-bio-sources

  • Stars
    star
    1
  • Language
    Java
  • Created over 6 years ago
  • Updated 5 months ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
WormBase/wormmine-bio-sources
github

WormBase

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

More Repositories

1

wormbase-pipeline

Wormbase Build Pipeline
Perl
22
star
2

wormbase_rest

This is an API to the datomic database and provides data to catalyst on a per widget basis as well as information for tools like blast.
Clojure
9
star
3

pseudoace

Modelling the WormBase ACeDB database in datomic.
Clojure
4
star
4

wormbase-architecture

Python
4
star
5

website-mobile

Mobile version of the WormBase website
CSS
4
star
6

website-classic

The original version of the WormBase website.
Perl
4
star
7

wormbase-curation

Scripts and documentation related to WormBase curation efforts
Perl
4
star
8

db-prototypes

Prototypes for the database migration project at WormBase.
HTML
3
star
9

wbps-expression

Transcriptomic data for WormBase ParaSite
Perl
3
star
10

AcePerl

Ace.pm - Perl interface to ACEDB databases
Perl
3
star
11

website-intermine-sources-DEPRECATED

The Intermine instance at WormBase
Java
3
star
12

wormcells-viz

Visualization tools for C. elegans single cell RNA sequencing data
JavaScript
3
star
13

website-public

WormBase webiste source code public mirror
HTML
3
star
14

textpresso_classifiers

Textpresso Document Classifier library and scripts
Python
3
star
15

scdefg

A single page Flask app with a GUI for performing differential expression with scvi-tools. Returns a volcano plot and downloadable tables with DE results.
Python
3
star
16

wbtools

Interface to WB curation data, with corpus management and NLP functions
Python
2
star
17

website-intermine

HTML
2
star
18

wormicloud

Interaction data analysis with word clouds
JavaScript
2
star
19

website-intermine-master-DEPRECATED

Master configuration and model files for Intermine at WormBase
Java
2
star
20

ky-projects

Karen's GSA and curation scripts
Perl
1
star
21

automated_descriptions

automated concise descriptions
Perl
1
star
22

hydraconference_2023

Course material for WormBase ParaSite's workshop at The Hydra Helminth Conference that took place in Hydra, Greece (September 2022).
1
star
23

caltech-curation

Perl
1
star
24

genedesc_generator

Automated gene descriptions generator for model organism databases
Python
1
star
25

SObA

Graph Summary of Ontology-based Annotation
Perl
1
star
26

website-genome-browsers

Perl
1
star
27

names

Names and identifiers service for facilitating collaboration between curation databases
Clojure
1
star
28

TableExtractionFromPDF

Extacting tables from PDFs using AWS textract
Python
1
star
29

website-biomart

The BioMart instance at WormBase
Perl
1
star
30

ACKnowledge

Author Curation to Knowledgebases
JavaScript
1
star
31

tpc-monitors

Monitor Textpresso Pipelines and Services with Prometheus and Grafana
Dockerfile
1
star
32

textpresso

Repository for TextPressoCentral
1
star
33

ideas-list

Ideas List for WomBase GSoC 2018
1
star
34

wormmine_help

CSS
1
star
35

xvi_iss_2022

Course material for WormBase ParaSite's course at the XVI International Symposium on Schistosomiasis that took place in Ouro Preto, Brazil (November 2022).
1
star
36

wormmine_testing

Small web app that automatically tests releases
Python
1
star
37

caltech-curation-services

Modular curation services for Caltech WormBase data
Perl
1
star
38

website-gbrowse2-support

Configuration and miscellaneous support files for our GBrowse2 installation
Perl
1
star
39

parasite-workshops

Materials for WormBase ParaSite workshops
1
star