WormBase/wormbase-curation WormBase/wormbase-curation

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    4
  • Rank 3,304,323 (Top 66 %)
  • Language
    Perl
  • Created almost 14 years ago
  • Updated almost 7 years ago
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WormBase/wormbase-curation
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WormBase

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Repository Details

Scripts and documentation related to WormBase curation efforts

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pseudoace

Modelling the WormBase ACeDB database in datomic.
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4

wormbase-architecture

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5

website-mobile

Mobile version of the WormBase website
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6

website-classic

The original version of the WormBase website.
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db-prototypes

Prototypes for the database migration project at WormBase.
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8

wbps-expression

Transcriptomic data for WormBase ParaSite
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9

AcePerl

Ace.pm - Perl interface to ACEDB databases
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10

website-intermine-sources-DEPRECATED

The Intermine instance at WormBase
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11

wormcells-viz

Visualization tools for C. elegans single cell RNA sequencing data
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12

website-public

WormBase webiste source code public mirror
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13

textpresso_classifiers

Textpresso Document Classifier library and scripts
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14

scdefg

A single page Flask app with a GUI for performing differential expression with scvi-tools. Returns a volcano plot and downloadable tables with DE results.
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15

wbtools

Interface to WB curation data, with corpus management and NLP functions
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2
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16

website-intermine

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2
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17

wormicloud

Interaction data analysis with word clouds
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18

website-intermine-master-DEPRECATED

Master configuration and model files for Intermine at WormBase
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19

ky-projects

Karen's GSA and curation scripts
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20

automated_descriptions

automated concise descriptions
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21

hydraconference_2023

Course material for WormBase ParaSite's workshop at The Hydra Helminth Conference that took place in Hydra, Greece (September 2022).
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22

wormmine-bio-sources

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23

caltech-curation

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24

genedesc_generator

Automated gene descriptions generator for model organism databases
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25

SObA

Graph Summary of Ontology-based Annotation
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26

website-genome-browsers

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27

names

Names and identifiers service for facilitating collaboration between curation databases
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28

TableExtractionFromPDF

Extacting tables from PDFs using AWS textract
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29

website-biomart

The BioMart instance at WormBase
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30

ACKnowledge

Author Curation to Knowledgebases
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31

tpc-monitors

Monitor Textpresso Pipelines and Services with Prometheus and Grafana
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32

textpresso

Repository for TextPressoCentral
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33

ideas-list

Ideas List for WomBase GSoC 2018
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34

wormmine_help

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35

xvi_iss_2022

Course material for WormBase ParaSite's course at the XVI International Symposium on Schistosomiasis that took place in Ouro Preto, Brazil (November 2022).
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36

wormmine_testing

Small web app that automatically tests releases
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37

caltech-curation-services

Modular curation services for Caltech WormBase data
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38

website-gbrowse2-support

Configuration and miscellaneous support files for our GBrowse2 installation
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39

parasite-workshops

Materials for WormBase ParaSite workshops
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