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wormbase-pipeline
Wormbase Build Pipelinewormbase_rest
This is an API to the datomic database and provides data to catalyst on a per widget basis as well as information for tools like blast.pseudoace
Modelling the WormBase ACeDB database in datomic.wormbase-architecture
website-mobile
Mobile version of the WormBase websitewormbase-curation
Scripts and documentation related to WormBase curation effortsdb-prototypes
Prototypes for the database migration project at WormBase.wbps-expression
Transcriptomic data for WormBase ParaSiteAcePerl
Ace.pm - Perl interface to ACEDB databaseswebsite-intermine-sources-DEPRECATED
The Intermine instance at WormBasewormcells-viz
Visualization tools for C. elegans single cell RNA sequencing datawebsite-public
WormBase webiste source code public mirrortextpresso_classifiers
Textpresso Document Classifier library and scriptsscdefg
A single page Flask app with a GUI for performing differential expression with scvi-tools. Returns a volcano plot and downloadable tables with DE results.wbtools
Interface to WB curation data, with corpus management and NLP functionswebsite-intermine
wormicloud
Interaction data analysis with word cloudswebsite-intermine-master-DEPRECATED
Master configuration and model files for Intermine at WormBaseky-projects
Karen's GSA and curation scriptsautomated_descriptions
automated concise descriptionshydraconference_2023
Course material for WormBase ParaSite's workshop at The Hydra Helminth Conference that took place in Hydra, Greece (September 2022).wormmine-bio-sources
caltech-curation
genedesc_generator
Automated gene descriptions generator for model organism databasesSObA
Graph Summary of Ontology-based Annotationwebsite-genome-browsers
names
Names and identifiers service for facilitating collaboration between curation databasesTableExtractionFromPDF
Extacting tables from PDFs using AWS textractwebsite-biomart
The BioMart instance at WormBaseACKnowledge
Author Curation to Knowledgebasestpc-monitors
Monitor Textpresso Pipelines and Services with Prometheus and Grafanatextpresso
Repository for TextPressoCentralideas-list
Ideas List for WomBase GSoC 2018wormmine_help
xvi_iss_2022
Course material for WormBase ParaSite's course at the XVI International Symposium on Schistosomiasis that took place in Ouro Preto, Brazil (November 2022).wormmine_testing
Small web app that automatically tests releasescaltech-curation-services
Modular curation services for Caltech WormBase datawebsite-gbrowse2-support
Configuration and miscellaneous support files for our GBrowse2 installationparasite-workshops
Materials for WormBase ParaSite workshopsLove Open Source and this site? Check out how you can help us