Wenlab/Computation-Neuro-Course

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Language
MATLAB
License
MIT License
Created about 6 years ago
Updated 2 months ago

Wenlab/Computation-Neuro-Course

Wenlab

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Welcome to the land of C Neuro.

CeNDeR

Processing pipeline, dataset, human annotation and proofreading toolkit for “Rapid detection and recognition of whole brain activity in a freely behaving Caenorhabditis elegans”

Jupyter Notebook

freeBrain

🧠 freeBrain provides real-time solutions for monitoring, manipulating, and modelling brain activity in a freely behaving animal. 🪱

BLITZ

Unified system code for running zebrafish operant learning experiment. Including visual stimulus generation (OpenGL), online image processing (OpenCV), video capture (Pylon) and relay control (Serial Comm).

ABLITZER

ABLITZER (the Analyzer of BLITZ Result) is a custom software suite (MATLAB) to process data produced by BLITZ (Behavioral Learning In The Zebrafish) which is another custom software (c++) that can automatically acquire high-throughtput behavioral data of larval zebrafish in learning tasks.

Lab-Communication

For discussions and comments across groups.

CeNDeR-annotation

This toolkit can view and annotate whole brain imaging data.

Machine_Label_of_Colbert

An algorithm to label the behaviours of C.elegans under the CoLBeRT system.