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DiffuserCam
DiffuserCam Processing CodeLenslessLearning
Code for Lensless Learning PaperDiffuserCam-Tutorial
Build-your-own DiffuserCam tutorialMultiWienerNet
DeepAutofocus
Single-shot autofocus on microscopes using deep learningDPC_withAberrationCorrection
M. Chen, Z. F. Phillips, and L. Waller, Quantitative differential phase contrast (DPC) microscopy with computational aberration correction, Opt. Express 26(25), 32888-32899 (2018).SpectralDiffuserCam
Code and project page for Spectral DiffuserCamUDN
FPM
NOVOCGH
NOVO-CGH algorithm implemented in Matlab for 3D CGHmulti-layer-born
multi-slice
Miniscope3D
Angle_SelfCalibration
Self calibration algorithms for illumination angle recovery.2D_high_content_speckle_SIM
3DQuantitativeDPC
BSCCM
Berkeley Single Cell Computational Microscopy datasetCalOptrics
CalOptrics is an open source fast and easy-to-use C++ library for CUDA-based GPU computing for Compuational Optical Imaging purposes. It uses an array-based function set which makes programming with CUDA easier than programming raw CUDA code, so it's main goal is to save time during gpu code development. The idea for CalOptrics was inspired by the GPU computing library ArrayFire: http://arrayfire.com/.DPC
3dDPC
C++ Implementation of Digital Refocusing algorithm described in http://www.opticsinfobase.org/ol/abstract.cfm?uri=ol-39-5-1326fresnel-prop
Optics FunctionsEncodingInformation
BRIEF
1. Y. Xue, D. Ren, L. Waller, Three-dimensional bi-functional refractive index and fluorescence microscopy (BRIEF). arXiv [physics.optics] (2020), (available at http://arxiv.org/abs/2011.11574).ledArrayPcbDesigns
LED Array PCB Designs for various Arraysandroid-3d-phase
Xray-TIE
Computes Projected Thickness via Phase-Contrast Imaging Algorithm that uses the Transport of Intensity Equation (Paganin Phase Retrieval from Single Defocused Image)PytorchComplexOps
SpeckleFlowSIM
Code and example notebooks for Speckle Flow SIM - Dynamic Structured Illumination Microscopy with a Neural Space-time ModelCompCellScopeAndroid
Latest development version of CellScope Android app and relevent codeLove Open Source and this site? Check out how you can help us