Waller-Lab/CalOptrics

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Waller-Lab/CalOptrics

Waller-Lab

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CalOptrics is an open source fast and easy-to-use C++ library for CUDA-based GPU computing for Compuational Optical Imaging purposes. It uses an array-based function set which makes programming with CUDA easier than programming raw CUDA code, so it's main goal is to save time during gpu code development. The idea for CalOptrics was inspired by the GPU computing library ArrayFire: http://arrayfire.com/.

DiffuserCam

DiffuserCam Processing Code

LenslessLearning

Code for Lensless Learning Paper

Jupyter Notebook

DiffuserCam-Tutorial

Build-your-own DiffuserCam tutorial

Jupyter Notebook

MultiWienerNet

Jupyter Notebook

DeepAutofocus

Single-shot autofocus on microscopes using deep learning

Jupyter Notebook

DPC_withAberrationCorrection

M. Chen, Z. F. Phillips, and L. Waller, Quantitative differential phase contrast (DPC) microscopy with computational aberration correction, Opt. Express 26(25), 32888-32899 (2018).

Jupyter Notebook

SpectralDiffuserCam

Code and project page for Spectral DiffuserCam

Jupyter Notebook

UDN

Jupyter Notebook

FPM

NOVOCGH

NOVO-CGH algorithm implemented in Matlab for 3D CGH

multi-layer-born

multi-slice

Miniscope3D

Jupyter Notebook

Angle_SelfCalibration

Self calibration algorithms for illumination angle recovery.

2D_high_content_speckle_SIM

Jupyter Notebook

3DQuantitativeDPC

Jupyter Notebook

BSCCM

Berkeley Single Cell Computational Microscopy dataset

Jupyter Notebook

DPC

3dDPC

C++ Implementation of Digital Refocusing algorithm described in http://www.opticsinfobase.org/ol/abstract.cfm?uri=ol-39-5-1326

fresnel-prop

Optics Functions

EncodingInformation

Jupyter Notebook

BRIEF

1. Y. Xue, D. Ren, L. Waller, Three-dimensional bi-functional refractive index and fluorescence microscopy (BRIEF). arXiv [physics.optics] (2020), (available at http://arxiv.org/abs/2011.11574).

Jupyter Notebook

Pattern_estimation_SIMS

ledArrayPcbDesigns

LED Array PCB Designs for various Arrays

android-3d-phase

Xray-TIE

Computes Projected Thickness via Phase-Contrast Imaging Algorithm that uses the Transport of Intensity Equation (Paganin Phase Retrieval from Single Defocused Image)

PytorchComplexOps

Jupyter Notebook

SpeckleFlowSIM

Code and example notebooks for Speckle Flow SIM - Dynamic Structured Illumination Microscopy with a Neural Space-time Model

Jupyter Notebook

CompCellScopeAndroid

Latest development version of CellScope Android app and relevent code