• Stars
    star
    8
  • Rank 2,092,503 (Top 42 %)
  • Language
    R
  • Created almost 5 years ago
  • Updated over 3 years ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Workshop on HPC with Slurm, R, and the slurmR package

More Repositories

1

slurmR

slurmR: A Lightweight Wrapper for Slurm
R
57
star
2

software-dev

Coding Standards for the USC Biostats group
HTML
34
star
3

partition

A fast and flexible framework for data reduction in R
HTML
34
star
4

rbootcamp

R boot camp: Scientific Computing
HTML
28
star
5

fmcmc

A friendly MCMC framework
R
16
star
6

PM566

USC's Introduction to Health Data Science
HTML
13
star
7

xrnet

R Package for Hierarchical Regularized Regression to Incorporate External Data
R
10
star
8

hJAM

hJAM is a hierarchical model which unifies the framework of Mendelian Randomization and Transcriptome-wide association studies.
R
9
star
9

classy

Simple example of C++ Classes and External Pointers with Rcpp
C++
9
star
10

PM520

PM520 Advanced Statistical Computing
Jupyter Notebook
8
star
11

GxEScanR

R version of GxEScan
R
7
star
12

barry

barry: Your go-to motif accountant
C++
7
star
13

LUCIDus-old

Latent Unknown Clustering with Integrated Data
R
6
star
14

LUCIDus

the new version of LUCID
R
6
star
15

aphylo

Statistical inference of genetic functions in phylogenetic trees
R
6
star
16

jsPhyloSVG

htmlwidgets for the jsPhyloSVG javascript library
JavaScript
5
star
17

r-parallel-benchmark

Using Rcpp with OpenMP (parfor and SIMD)
C++
5
star
18

docker-example

Dockerfile
3
star
19

BHRM

An R function for mixtures analysis in environmental epidemiology.
R
3
star
20

fdrci

Permutation-Based FDR Point and Confidence Interval Estimation
R
3
star
21

HiLDA

📦 An R package for inferring the mutational exposures difference between groups.
R
3
star
22

cit

C++
2
star
23

uscrbootcamp

An R package to help install the USC R Bootcamp: Intro to Data Analysis
R
2
star
24

causnet

Find globally optimal causal network
R
2
star
25

extendGeneAnnotations

R
2
star
26

iMutSig

iMutSig: a web application to identify the most similar mutational signature using shiny
R
2
star
27

Methylation-variability

R
1
star
28

ENmixUSC

R
1
star
29

handbook

CSS
1
star
30

software-dev-site

1
star
31

figi

All code used in FIGI analyses, plots, documentation, presentations.
R
1
star
32

LinGxEScanR

R
1
star
33

laerug-hpc-w-r-nov2018

HTML
1
star
34

LAsBEST

Repository of USC's LA's BEST program. https://lasbest.usc.edu/
HTML
1
star
35

aws-notes

Random notes on how to use AWS for our research
1
star
36

pruner

pruner: Implementing the Felsenstein's Tree Pruning algorithm
C++
1
star
37

PM570-Colab

Repository for USC PM570 - Statistical Methods in Human Genetics
Jupyter Notebook
1
star
38

research-pipelines

Happy Scientist Seminar: Research Pipelines
JavaScript
1
star
39

Pm566-syllabus-outline

Our latest thoughts on what should be covered in a new PM566 course (Intro to Health Data Science)
Rich Text Format
1
star
40

bayesnetworks

C++ program to fit Bayesian networks, illustrated with simulated data from P3 of our IMAGE grant application
C++
1
star
41

badges

Badges for USC's Biostats repositories
1
star
42

BinaryDosage

Converts VCF files to a binary format
R
1
star
43

AnnoQR

R client wrap for AnnoQ API
R
1
star
44

ACDC

Association of covariance to detect differential co-expression
R
1
star