Discover UCL/membranedivergence Open Source project

Software for Tomographic Image Reconstruction

149

STIR

Course materials for Research Software Engineering course.

101

rsd-engineeringcourse

Partial Volume Correction in PET

100

PETPVC

Bunch of CMake pain in the baker

GreatCMakeCookOff

CMake

ucl-beamer

UCL template for LaTeX Beamer presentations

UCL-ARC *C++ for Research* course

dfpi

research-computing-with-cpp

Ruby

hemelb

HemeLB now lives at https://github.com/hemelb-codes/hemelb

A place to store and edit the lab handbook for UCL courses that involve the use of open source tools in molecular docking.

Open_Docking_Lab_Handbook

Lattice-Boltzmann implementation in Julia

LatBo.jl

Julia

MPHY0026

Example files on how to run STIR on GATE data

STIR-GATE-Connection

STIR-exercises

Exercises for STIR

Command line tools for PET-MR (pre-)processing

pet-rd-tools

Templates for commonly used GitHub actions steps

composite-actions

Python Bioinformatics Toolkit for CATH (Protein Classification Database @ UCL)

cathpy

UCL latex letter template

ucl-letter

TDMS

Time Domain Maxwell Solver

Implementation of GEBCO cookbook remove-restore and other cleaning of topography/bathymetry. Uses `pyGMT`.

pyCascadia

Some prolog/epilog Scripts we use with Grid engine on our cluster

ADMUR

Grid-Engine-Prolog-Scripts

fan-slicer

Epidemiology modelling framework for the Thanzi la Onse project

TLOmodel

Multiple Object Feature Fusion for weakly supervised deep learning

FASt-MAL-MOFF

Sparse Variational Additive Gaussian Process

SVAGP

Consistent and invertible deformation vector fields for a breathing anthropomorphic phantom: a post-processing framework for the XCAT phantom. Find the documentation on the linked website.

cid-X

Python library for generating EnergyPlus inputs

simstock

C library implementing Geometric Parallel Population MCMC. See http://www.hector.ac.uk/cse/distributedcse/reports/UniMCMC/.

GMCMC

ucl_software_carpentry

Materials for the UCL software carpentry

MATLAB files implementing the vascular geometry reconstruction algorithm in Bernabeu et al. "Computer simulations reveal complex distribution of haemodynamic forces in a mouse retina model of angiogenesis" J. R. Soc. Interface 2014

BernabeuInterface2014

Repository for the source code for COMP0037 Academic year 2021-2022

COMP0037-21_22

COMP0130_23-24

Docker container definitions for VSCode C++ development environment

rc-cpp-vscode-dev-container

Dockerfile

kaska

COMP0037_23-24

Code base for CATH Funsite predictor for generation of protein functional sites

cath-funsite-predictor

Mac Support Resources for UCL. Managed by the ISD Mac Support Project, and open for the use of all across UCL.

Mac-Support-Resources

COMP0130_22-23_Topic_03

Multi-objective-Bayesian-Optimization

Instructions for using the Economics HPC

ECON-CLUSTER

HTML

PP-SVGPFA

Code for Point Process Sparse Variational Gaussian Process Factor Analysis

Public release of the code for paper 846 of AGILE2023

ioe-student-school-allocation

Holder

COMP0130

COMP0130 Coursework 2

Collection of helper functions for working with DOLFINx Python interface

dxh

Future Urban Growth (Isobenefit Cities)

BSP-isobenefit-qgis-plugin

dxss

DOLFINx slab solver

Reusable GitHub Actions workflows

reusable-workflows

Bayesian_opt_Pyro

This repo will implement Bayesian optimization using PYRO

Development version of the UK CORDEX's plot explorer website

UKCORDEX-plot-explorer-dev

JavaScript

OSPO

Open Source Programme Office

rsd-cppcourse

Intensive C++ for Research

Ruby

twitter-compliance

Multi-module Jakarta EE application for syncing compliance events from Twitter

Java

RefbasedMI

Multiple imputation sensitivity analysis for longitudinal trials

UKCORDEX-plot-explorer

This website displays plots showing bias analysis in different climate models.

SuPReMo

Surrogate Parameterised Respiratory Motion Modelling Framework

RCPSTrainingMaterials

RCPS Training Materials

A template workflow for lightweight EBDP workflows

simansuite

HTML

ba-ebdp-lightweight-template

MacOS desktop application for processing Google Takeout export files

takeout-app-macos

Swift

scikit-surgerysurfacematch

Tools for reconstructing and matching surfaces represented as point clouds.

Motion Correction of multi-shot MR data using sub images

subimagemoco

Implementation of RESOLUTE pseudo-CT method for mMR.

petmr-RESOLUTE

Process modelling & optimisation, originally developed for bio-pharmaceuticals, in Python

PyBioPharma

Lightweight modelling workflow for EBDP TWIN2EXPAND project

artbin

Stata

ba-ebdp-toolkit

scikit-surgerygoicp

Examples of calibrating Neptune Exploratory Software (NESO) models

neso-calibration

SkullBaseNavigation

A tool to wipe out local Group Policies on a Windows box

Hack-Windows-GPO

Collection of Vagrantfiles used in development and prototyping

devboxes-vagrant

Ruby

frrant

A wrapper for the various MPI implementations on Legion to abstract them so that users don't need to know all the options.

GERun

Code in Stata and R supporting article on "How to check a simulation study"

simcheck

Blender_Randomiser

Image guided surgery functions, using PCL in C++, but built into a Python extension.

scikit-surgerypclcpp

Support material for COMP0037 22-23

COMP0037_22-23

Website, REST API, and data processors for the fludetector service from UCL

fludetector-flask

Crude julia package to play with docker

RudeOil.jl

Julia

hacking-the-climate-code

This repository stores the codes for the 'hacking the climate' event (1-4 Jun '21)

Data holder of UK CORDEX plot explorer images and data

UKCORDEX-plot-explorer-data

github-example

terraform-azure-sirf

Building SIRF VM on Azure using Terraform

HCL

motionModelFromXCATDVFs

Understanding the differences running code in the cloud vs HPC systems in UK.

rc-cpp-classwork-2020-21

CloudProject

COMP0130_22-23_Topic_02

A Teaching Example Based on Smooth Life

SmoothLifeExample

Nonconforming ill posed stabilized fem for stokes problem

stokes-nc-ill-posed

Example of how to create UCL-looking content on GitHub pages

ucl-github-pages-example

CSS

Synthetic_Liver_IPCAI_2022

ucl-rc-mwskin

UCL Research Computing Mediawiki Skin -- DEPRECATED: uses deprecated skin autodiscovery mechanism

PHP

channel_fmf

few-mode fibre transmission simulator

latex-math-a11y

Training course in research computing provided by UCL Research IT Services

rsd-engineeringcourse-old

linearized-NSE-data-assimilation

Starting point for PHAS0100Assignment1 2021/22 Game of Life Simulation

PHAS0100Assignment1

This repo describes with a simple example how to use docker to containerise your project/algorithm

scikit-surgerydocker

HTML

100

i_newspaper_rods

Working with iRods to analyse the Times Digital Archive