Discover UCL/cathpy Open Source project

Software for Tomographic Image Reconstruction

149

STIR

Course materials for Research Software Engineering course.

112

rsd-engineeringcourse

Partial Volume Correction in PET

100

PETPVC

Bunch of CMake pain in the baker

GreatCMakeCookOff

CMake

ucl-beamer

UCL template for LaTeX Beamer presentations

UCL-ARC *C++ for Research* course

research-computing-with-cpp

Ruby

dfpi

hemelb

HemeLB now lives at https://github.com/hemelb-codes/hemelb

A place to store and edit the lab handbook for UCL courses that involve the use of open source tools in molecular docking.

Open_Docking_Lab_Handbook

Lattice-Boltzmann implementation in Julia

LatBo.jl

MPHY0026

STIR-exercises

STIR-GATE-Connection

Example files on how to run STIR on GATE data

Command line tools for PET-MR (pre-)processing

pet-rd-tools

Templates for commonly used GitHub actions steps

composite-actions

Epidemiology modelling framework for the Thanzi la Onse project

TLOmodel

Time Domain Maxwell Solver

TDMS

ADMUR

fan-slicer

UCL latex letter template

ucl-letter

pyCascadia

Implementation of GEBCO cookbook remove-restore and other cleaning of topography/bathymetry. Uses `pyGMT`.

Some prolog/epilog Scripts we use with Grid engine on our cluster

Grid-Engine-Prolog-Scripts

Multiple Object Feature Fusion for weakly supervised deep learning

FASt-MAL-MOFF

Sparse Variational Additive Gaussian Process

SVAGP

Python library for generating EnergyPlus inputs

simstock

Consistent and invertible deformation vector fields for a breathing anthropomorphic phantom: a post-processing framework for the XCAT phantom. Find the documentation on the linked website.

cid-X

Docker container definitions for VSCode C++ development environment

rc-cpp-vscode-dev-container

Dockerfile

GMCMC

C library implementing Geometric Parallel Population MCMC. See http://www.hector.ac.uk/cse/distributedcse/reports/UniMCMC/.

ucl_software_carpentry

Materials for the UCL software carpentry

COMP0130_22-23_Topic_03

Repository for the source code for COMP0037 Academic year 2021-2022

COMP0037-21_22

MATLAB files implementing the vascular geometry reconstruction algorithm in Bernabeu et al. "Computer simulations reveal complex distribution of haemodynamic forces in a mouse retina model of angiogenesis" J. R. Soc. Interface 2014

BernabeuInterface2014

kaska

Mac Support Resources for UCL. Managed by the ISD Mac Support Project, and open for the use of all across UCL.

Mac-Support-Resources

Open Source Programme Office

OSPO

cath-funsite-predictor

Code base for CATH Funsite predictor for generation of protein functional sites

Surrogate Parameterised Respiratory Motion Modelling Framework

SuPReMo

COMP0130_23-24

Multi-objective-Bayesian-Optimization

Instructions for using the Economics HPC

ECON-CLUSTER

HTML

PP-SVGPFA

Code for Point Process Sparse Variational Gaussian Process Factor Analysis

COMP0037_23-24

Public release of the code for paper 846 of AGILE2023

ioe-student-school-allocation

Holder

COMP0130

COMP0130 Coursework 2

Collection of helper functions for working with DOLFINx Python interface

dxh

Future Urban Growth (Isobenefit Cities)

BSP-isobenefit-qgis-plugin

dxss

DOLFINx slab solver

Reusable GitHub Actions workflows

reusable-workflows

scikit-surgerysurfacematch

Tools for reconstructing and matching surfaces represented as point clouds.

This repo will implement Bayesian optimization using PYRO

Bayesian_opt_Pyro

Development version of the UK CORDEX's plot explorer website

UKCORDEX-plot-explorer-dev

JavaScript

rsd-cppcourse

Intensive C++ for Research

Ruby

twitter-compliance

Multi-module Jakarta EE application for syncing compliance events from Twitter

Java

RefbasedMI

Multiple imputation sensitivity analysis for longitudinal trials

simcheck

Code in Stata and R supporting article on "How to check a simulation study"

UKCORDEX-plot-explorer

This website displays plots showing bias analysis in different climate models.

RCPSTrainingMaterials

RCPS Training Materials

MacOS desktop application for processing Google Takeout export files

simansuite

HTML

takeout-app-macos

Swift

subimagemoco

Motion Correction of multi-shot MR data using sub images

Process modelling & optimisation, originally developed for bio-pharmaceuticals, in Python

PyBioPharma

Implementation of RESOLUTE pseudo-CT method for mMR.

petmr-RESOLUTE

A template workflow for lightweight EBDP workflows

ba-ebdp-lightweight-template

artbin

Stata

scikit-surgerygoicp

Lightweight modelling workflow for EBDP TWIN2EXPAND project

ba-ebdp-toolkit

Examples of calibrating Neptune Exploratory Software (NESO) models

neso-calibration

SkullBaseNavigation

A tool to wipe out local Group Policies on a Windows box

Hack-Windows-GPO

Collection of Vagrantfiles used in development and prototyping

devboxes-vagrant

Ruby

frrant

JavaScript

GERun

A wrapper for the various MPI implementations on Legion to abstract them so that users don't need to know all the options.

Blender_Randomiser

Image guided surgery functions, using PCL in C++, but built into a Python extension.

scikit-surgerypclcpp

Website, REST API, and data processors for the fludetector service from UCL

fludetector-flask

Support material for COMP0037 22-23

COMP0037_22-23

Simstock plugin for QGIS: allows dynamic urban building energy models to be created and simulated all within QGIS.

simstock_qgis

Crude julia package to play with docker

RudeOil.jl

Julia

cath-gemma

GeMMA, the step of the FunFam protocol that builds a superfamily's tree from S90 clusters of its Gene3D sequences

Perl

hacking-the-climate-code

This repository stores the codes for the 'hacking the climate' event (1-4 Jun '21)

Data holder of UK CORDEX plot explorer images and data

UKCORDEX-plot-explorer-data

github-example

motionModelFromXCATDVFs

Building SIRF VM on Azure using Terraform

terraform-azure-sirf

HCL

rc-cpp-classwork-2020-21

CloudProject

Understanding the differences running code in the cloud vs HPC systems in UK.

membranedivergence

CSS

COMP0130_22-23_Topic_02

Application to view and comment on Disease Atlas results

atlasview

rmcmc

Robust Markov chain Monte Carlo methods in R

SmoothLifeExample

A Teaching Example Based on Smooth Life

Nonconforming ill posed stabilized fem for stokes problem

stokes-nc-ill-posed

Example of how to create UCL-looking content on GitHub pages

ucl-github-pages-example

CSS

Synthetic_Liver_IPCAI_2022

ucl-rc-mwskin

UCL Research Computing Mediawiki Skin -- DEPRECATED: uses deprecated skin autodiscovery mechanism

PHP

channel_fmf

few-mode fibre transmission simulator

latex-math-a11y

Training course in research computing provided by UCL Research IT Services

100

rsd-engineeringcourse-old