Transipedia/dekupl-run Transipedia/dekupl-run

  • Stars
    star
    11
  • Rank 1,694,829 (Top 34 %)
  • Language
    R
  • License
    MIT License
  • Created over 7 years ago
  • Updated over 3 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
Transipedia/dekupl-run
github

Transipedia

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Identify differentially expressed k-mers between RNA-Seq datasets

More Repositories

1

dekupl

Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.
15
star
2

KaMRaT

C++
11
star
3

dekupl-annotation

Annotate DE contigs identified by DE-kupl.
Perl
4
star
4

Annotate-contigs

Generalized contig annotation (dekupl-annot 2.0 in python)
Python
3
star
5

dekupl-joinCounts

Join multiple k-mer abundance files into a single matrix.
C
2
star
6

KamScan

A simple Python script for scanning a kmer count matrix and select lines with desired statistics
Python
2
star
7

dekupl-viewer

Shiny app to interactively visualize DE-kupl Annotation output
R
2
star
8

meta-bam

Sample reads from fastq files - align to genome - makes a "meta-bam" file.
Shell
1
star
9

dekupl-lung-cancer-inter-cohort

Replicability of dekupl and gene-level predictions across 2 independent lung cancer cohorts
Python
1
star