ToHanwei/repider_search_post

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Created over 6 years ago
Updated over 6 years ago

ToHanwei/repider_search_post

ToHanwei

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Rosetta-Chinese

Genome2OR

Annotate Olfactory receptor CDS from genome

some_assist

Deeplearning_tutorial

Jupyter Notebook

Get_GPCR_ligands

From web get GPCR's ligand information

Experimental_data_processing

Help Shuhua process experimental data

Jupyter Notebook

CORD

Chordate olfactory receptor serce

SequenceProcessing

Process FASTA format sequences

Random_build_protein_model

Use modeller programmer to build protein model

Genome2TAAR

Annotation TAAR from genome

Recruitment_analyze

download fasta format sequence from PDB web site

GMX_ligamd_annealing_sampling

Periodic simulated annealing sampling

BLOSUM_matrix_calulate

Calculate BLOSUM matrix from Blocks database

CDSmsa

coding sequence MSA（multiple sequence alignment）

MyLab_script

get-fasta-sequence-2

download fasta format sequence from PDB web site

Bioinformatics

analyze_txt

Analyze who is Weixiaobao' true love

motif_search

from proteins family aligenment search motif

DNAmsa

peach

CDHIT

According to the CDHIT paper, try using python to implatement the tool. This is just to help me to understand it.

CORD2.0-help

CORD_data

Genome2RTP

Annotation RTPs from genome.

ProteinModel

auto_CORD_model

ORSSN

Olfactory Receptory Sequence Similarity Network (ORSSN)

get_max_time_for_Manlin

Manlin want get the max data and corresponing time, I write this code help her