TileDB-Inc/TileDB-Py

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Python
License
MIT License
Created over 7 years ago
Updated 3 months ago

TileDB-Inc/TileDB-Py

TileDB-Inc

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Python interface to the TileDB storage engine

TileDB-Py

TileDB-Py is a Python interface to the TileDB Storage Engine.

Quick Links

Quick Installation

TileDB-Py is available from either PyPI with pip:

pip install tiledb

or from conda-forge with conda or mamba:

conda install -c conda-forge tiledb-py

Dataframes functionality (tiledb.from_pandas, Array.df[]) requires Pandas 1.0 or higher, and PyArrow 1.0 or higher.

Contributing

We welcome contributions, please see CONTRIBUTING.md for suggestions and development-build instructions. For larger features, please open an issue to discuss goals and approach in order to ensure a smooth PR integration and review process.

TileDB

The Universal Storage Engine

TileDB-R

R interface to TileDB: The Modern Database

TileDB-VCF

Efficient variant-call data storage and retrieval library using the TileDB storage library.

TileDB-Go

Go Interface to the TileDB storage manager

TileDB-Vector-Search

Cloud-native vector similarity search and storage with efficient, serverless scale-out

Jupyter Notebook

TileDB-Trino

TileDB Connector for TrinoDB

TileDB-MariaDB

MyTile is a MariaDB storage engine for accessing TileDB arrays

TileDB-Java

Java JNI interface to the TileDB storage engine

TileDB-ML

TileDB integrations for machine learning data and model i/o (PyTorch, TensorFlow, Scikit-Learn)

TileDB-Examples

Notebooks which are dedicated examples for TileDB

Jupyter Notebook

TileDB-CF-Py

TileDB interface with awareness of the CF metadata conventions

TileDB-CSharp

C# API for TileDB Embedded

TileDB-Spark

Spark interface to the TileDB storage manager

TileDB-BioImaging

Package providing bioimaging functionality using TileDB. Source of the tiledb-bioimg Python package.

TileDB-Cloud-Py

Python interface to TileDB Cloud REST API

shinybg

Run and manage Shiny applications as background processes.

tiledbsc

Single-cell data structures in TileDB

TileDB-xarray

A TileDB backend for xarray.

TileDB-Cloud-JS

TileDB Cloud Javascript Client

TileDB-Viz

A collection of packages to help create beautiful visualizations from TileDB arrays

napari-tiledb-bioimg

TileDB BioImaging plugin for Napari

TileDB-Presto

TileDB Connector for PrestoDB

tiledb-benchmarks

TileDB benchmark scripts and output

Jupyter Notebook

TileDB-Geospatial

TileDB geospatial docker image

tiledb-rs

Rust Bindings for TileDB [early wip]

TileDB-PyBabylonJS

BabylonJS based viewer for three dimensional TileDB arrays

TileDB-CLI

CLI to the TileDB array storage manager

scverse-ml-workshop-2024

Scripts/Notebooks for "Training models on atlas-scale single-cell datasets" at scverse Conference 2024

Jupyter Notebook

tiledb-vcf-feedstock

TileDB-FOSS4G-2021

Resources for the 2021 FOSS4G Conference

Jupyter Notebook

rwinlib-tiledb

TileDB-Docker

Docker files for TileDB

TileDB-Cloud-JDBC

JDBC driver for TileDB-Coud

TileDB-NYSE-Ingestor

Ingestor for loading NYSE data into tiledb

archived-TileDB-FastQ

FastQ ingestor using TileDB storage format

tiledbsoma-feedstock

A conda-smithy repository for tiledbsoma.

7k

Teledyne Marine 7k protocol for marine sensor interfacing.

TileDB-Cloud-JS-demo

htslib-feedstock

cellxgene-census-feedstock

TileDB-Cloud-PythonDB

TileDB Connector for Python DB API 2.0

TileDB-Cloud-Jupyter-Contents

Jupyter notebook (lab) content manager based on TileDB Cloud

TileDB-Cloud-Java

TileDB-Cloud-Java contains the Java client for the TileDB Cloud Service

homebrew-stable

Homebrew tap for TileDB

conda-forge-nightly-controller

Centralized nightly CI builds for TileDB conda feedstocks

TileDB-Cloud-API-Spec

TileDB Cloud REST Specification

TileDB-MariaDB-Embedded-Example

Instructions and examples of using MariaDB embedded with the MyTile storage engine

tiledb-vector-search-feedstock

pyread7k

Pyread7k is a library for reading 7k files. It provides a high-level interface to the data in a file, with an API that is a compromise between being ergonomic, while still being easy to correlate with the Data Format Definition.

TileDB-Cloud-R

TileDB-Cloud-R contains the R client for the TileDB Cloud Service

pydata-demo

Notebook from PyData NYC

Jupyter Notebook

MariaDB-ServerFest2021-Benchmarks

github-actions

TileDB-Notebooks

TileDB Jupyter Notebooks

Jupyter Notebook

centralized-tiledb-nightlies

Centralized nightly builds of TileDB stack

pysam-feedstock

TileDB-SAR

SAR processing with TileDB

TileDB-Cloud-CSharp

This repository contains the CSharp client for the TileDB Cloud Service.

TileDB-Tableau-Connector

Custom Tableau connector for the TileDB-Cloud JDBC driver

bioimg-compression-demo

Demonstration and side-by-side comparison of histopathology image conversion from SVS to TileDB