TeMU-BSC/Biomedical_NER_models

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TeMU-BSC/Biomedical_NER_models

TeMU-BSC

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codiesp-evaluation-script

Evaluation library for CodiEsp Task

PharmaCoNER-Tagger

PharmaCoNER Tagger is a Neural Named Entity Recognition program targeting domain adaptation, particularly in the case of Spanish medical texts. It is based on NeuroNER.

TEMUNormalizer

Baseline term normalizer to find Snomed and CIE-10 codes in a list of terms

AnonymizationPipeline

Anonymization Pipeline for injesting data from outside of BSC that contains GDPR protected data.

corpus-cleaner-acl

web-scrapping

Repository that contains all web scrapping scripts written by text mining group

iaa-computation

Compute Inter Annotator Agreement from Brat files

catalan_CC0_sentences

collected CC0 sentences written in Catalan

iberifier

Jupyter Notebook

embeddings_v1.0

spanish-person-names-generator

Generator of Spanish names based on the lists of INE

temu-webpage

Landing page of the Text Mining Unit at Barcelona Supercomputing Center.

demos

Web demos for some text mining projects

ASIT

Advanced Semantic Indexing Tool

TemuSTS

Programa de análisis de frases similares en dos corpus.

distemist_evaluation_library

mesinesp-workflow

Personalized Mailing and Evaluation engines for MESINESP task.

wmt2021-indoeuropean

socialdisner_evaluation_script

clinical-nested-ner

indexer

DeCS Indexer frontend and backend for MESINESP task.

seq-to-seq-catalan

Sequence to sequence language resources for Catalan and for two tasks, namely: Summarization and Machine Translation.

Jupyter Notebook

cantemist-evaluation-library

Compute evaluation metrics for Cantemist submissions

language-model-prepro

Preprocessing scripts for language models

spactes

Apache SpaCTeS-cTAKES

meddoprof-evaluation-library

brat-merger

compare-annotations

Qualitative analysis and Quantifying Variability of Manual Annotations

detect-annotations

Detect missed annotations in BRAT files based on previous annotations (from other files).

meddoprof-baseline

Baseline for the MEDDOPROF Shared Task on occupation detection and normalization.

BioTextMiner

BioTextMiner is a web application developed by the NLP4BIA that provides a user-friendly interface for corpus control of biomedical corpora. With BioTextMiner, researchers can easily manage and manipulate large-scale biomedical text data by organizing and curating it in a centralized database

json-converters

medprocner_evaluation_library

Evaluation library for the MedProcNER/ProcTEMIST shared task (https://temu.bsc.es/medprocner/)