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Sex.DetERRmine
A python script to calculate the relative coverage of X and Y chromosomes, and their associated error bars, from the depth of coverage at specified SNPs.AdmixturePlotter
An R script to generate plots for ADMIXTURE runs, for multiple K values.RAStools
A set of tools to calculate Rare Allele Sharing statistics.EigenStratDatabaseTools
A set of tools to compare and manipulate the contents of EingenStrat databases, and to calculate SNP coverage statistics in such databases.RelativeAlleleSharing
Scripts to calculate Relative Allele Sharing (RAS) between individuals/populations from a FreqSum file.BareBonesBash
A basic Bash tutorial by @jfy133, @aidaanva and @TCLamnidis.contammix_pipeline
a nextflow pipeline to run Contammix and all the necessary preprocessing for it.pMMRCalculator
A small python tool to calculate pairwise mismatch rate between all individuals in an EigenStrat dataset.eagerR
An R package to assist in reading of nf-core/eager results into R objects.ContaminateGenotypes
A simple python script to contaminate Eigenstrat genotypes.Love Open Source and this site? Check out how you can help us