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Sex.DetERRmine
A python script to calculate the relative coverage of X and Y chromosomes, and their associated error bars, from the depth of coverage at specified SNPs.RAStools
A set of tools to calculate Rare Allele Sharing statistics.EigenStratDatabaseTools
A set of tools to compare and manipulate the contents of EingenStrat databases, and to calculate SNP coverage statistics in such databases.qpWrapper
RelativeAlleleSharing
Scripts to calculate Relative Allele Sharing (RAS) between individuals/populations from a FreqSum file.BareBonesBash
A basic Bash tutorial by @jfy133, @aidaanva and @TCLamnidis.contammix_pipeline
a nextflow pipeline to run Contammix and all the necessary preprocessing for it.pMMRCalculator
A small python tool to calculate pairwise mismatch rate between all individuals in an EigenStrat dataset.eagerR
An R package to assist in reading of nf-core/eager results into R objects.ContaminateGenotypes
A simple python script to contaminate Eigenstrat genotypes.Love Open Source and this site? Check out how you can help us