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WikidataIntegrator
A Wikidata Python module integrating the MediaWiki API and the Wikidata SPARQL endpointDrugMechDB
A database of paths that represent the mechanism of action from a drug to a disease in an indication.Applied-Bioinformatics
Student course material for the Applied Bioinformatics course at Scripps ResearchYPet
Javascript library to rapidly annotate paragraphs of text on websites with the goal of making the annotation process as fast and simple as possible.mark2cure
Mark2Cure allows anyone that can read English, regardless of background, to help in the process of biomedical discovery.sparql_to_pandas
Example for accessing SPARQL endpoints in Python with Pandasscheduled-bots
GeneWiki Scheduled BotsWikiGenomesBase
A configurable codebase for launching organism specific WikiGenomes spinoff applications (e.g. ChlamBase.org) This is a web application framework for creating a model organism database leveraging the taxonomic, genetic and functional data that has been loaded to Wikidata.org by the Gene Wiki Project.genewikiworld
Generate a network of all items we care about, and some we don't....MechRepoNet
GeneWikiCentral
GeneWiki OrganizationfiSSEA
Functional Impact SNP Set Enrichment AnalysisTSRI-CBB
This is the Github repository for The Scripps Research Institute Computational Biology and Bioinformatics (CBB) community and affiliated core track for graduate students.genewiki
The GeneWiki Projectbioshovel
Biological text mining tool.WD-rephetio-analysis
Wikidata-phenomizer
Incorporate wikidata statements into phenomizergarbanzo
Wikidata Semantic Query APIwikidatasparqlexamples
WikiGenomes.org
Genome data portal for the GeneWiki Project in WikidataM2C_rel_nb
Antibody-Clustering-Challenge
This the material for our TopCoder ChallengeKrusty
neo4j <-> wikibase import/export tooldecision-tree-viewer
The decision tree visualization tests for COMBOsingle_cell_macrophage
crowdflower_relation_verification
Verification of EU-ADR drug-disease relationships using crowdsourcing.biogps_plugin_checker
Check public plugins in the BioGPS plugin library for any access errorsLove Open Source and this site? Check out how you can help us