• Stars
    star
    3
  • Rank 3,963,521 (Top 79 %)
  • Language q
  • License
    MIT License
  • Created over 5 years ago
  • Updated about 5 years ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Details on the data analysis for "New kinship and F_ST estimates reveal higher levels of differentiation in the global human population" by Ochoa and Storey

More Repositories

1

qvalue

R package to estimate q-values and false discovery rate quantities.
R
109
star
2

biobroom

Tidy up computational biology objects
R
48
star
3

reading

A collection of papers and books that Storey Lab members should read and others may find useful
47
star
4

terastructure

TeraStructure is a new algorithm to fit Bayesian models of genetic variation in human populations on tera-sample-sized data sets (10^12 observed genotypes, i.e., 1M individuals at 1M SNPs). This package provides a scalable, multi-threaded C++ implementation that can be run on a single computer.
C++
47
star
5

edge

R package for identifying differentially expressed genes from genome-wide gene expression profiling studies.
R
21
star
6

subSeq

Subsampling of high-throughput sequencing count data
R
19
star
7

popkin

R package to estimate kinship and FST from SNP data
R
19
star
8

lfa

logistic factor analysis
R
16
star
9

superSeq

Assessing the increase in power from increasing read depth in a given RNA-Seq study
R
13
star
10

alstructure

An R package that implements the ALStructure algorithm for estimating the admixture model of genetic population structure
HTML
9
star
11

bnpsd

R package to model and simulate admixed populations
R
8
star
12

gcatest

genotype conditional association test
R
5
star
13

fFDR

Functional FDR package
R
5
star
14

gcat

This package has been renamed gcatest: https://github.com/StoreyLab/gcatest
R
3
star
15

sparta

Dividing RNA-Seq reads based on their ancestral genotype
Python
3
star
16

superSeq-manuscript

R
2
star
17

ALStructure-manuscript

Data and code utilized in "A likelihood-free estimator of population structure bridging admixture models and principal components analysis", by Cabreros and Storey
R
1
star
18

factorial-MA-RS

Supplementary Materials for the manuscript "A nested parallel experiment demonstrates differences in intensity-dependence between RNA-seq and microarrays" by Robinson, Wang, and Storey
R
1
star