SpikeInterface/spikeinterface-pipelines

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Created about 1 year ago
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SpikeInterface/spikeinterface-pipelines

SpikeInterface

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Collection of standardized analysis pipelines based on SpikeInterface

spikeinterface

A Python-based module for creating flexible and robust spike sorting pipelines.

spikeextractors

Python-based module for extracting from, converting between, and interfacing with many common file formats in extracellular recording.

spiketutorials

Tutorials for using SpikeInterface on extracellular datasets.

Jupyter Notebook

probeinterface

Python package to handle probe layout, geometry and wiring to device.

spiketoolkit

Python-based tools for pre-, post-processing, validating, and curating spike sorting datasets.

MEArec

Fast and customizable of extracellular recordings on MEA

spikeinterface-gui

GUI for spikeinterface objects

spikesorters

Python-based module with spike sorter wrappers and a simple API for running them.

spikely

A GUI for running popular spike sorting algorithms on extracellular data of any file format.

spikemetrics

Metrics for spike sorting validation/quality control

probeinterface_library

Collection of probe description for probeinterface

spikeinterface-dockerfiles

Collection of spike sorters Docker files

spikewidgets

Python-based widgets for spike sorting and electrophysiology.

SpikeInterface-Hackathon-Edinburgh-May24

Repo for SpikeInterface Hackathon in Edinburgh - May24

spikecomparison

Python-based modules to compare and benchmark spike sorting results.

spikeresults

A collection of notebooks with results obtained with the help of SpikeInterface

Jupyter Notebook

SpikeInterface.github.io

spikeinterface report

Jupyter Notebook

ndx-probeinterface

Extension for neural probes in the probeinterface format to NWB

SpikeInterface-Training-Edinburgh-May24

Material for user training day of SpikeInterface

Jupyter Notebook

spikeinterface-events

Material for courses, conferences, and events about SpikeInterface

spikeinterface-airspeed-velocity-benchmarks

Benchmark SpikeInterface performance with Airflow

hybrid_template_library

Library of templates to create hybrid data for spike sorting benchmarks

Jupyter Notebook

spikefeatures

Feature extraction library for extracellular waveforms

test-sv-sorting-curation

Test repo for SortingView curation