SpikeInterface/MEArec

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41
Rank 664,898 (Top 14 %)
Language AGS Script
License
GNU General Publi...
Created about 6 years ago
Updated 5 months ago

SpikeInterface/MEArec

SpikeInterface

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Fast and customizable of extracellular recordings on MEA

spikeinterface

A Python-based module for creating flexible and robust spike sorting pipelines.

spikeextractors

Python-based module for extracting from, converting between, and interfacing with many common file formats in extracellular recording.

spiketutorials

Tutorials for using SpikeInterface on extracellular datasets.

Jupyter Notebook

spiketoolkit

Python-based tools for pre-, post-processing, validating, and curating spike sorting datasets.

probeinterface

Python package to handle probe layout, geometry and wiring to device.

spikesorters

Python-based module with spike sorter wrappers and a simple API for running them.

spikeinterface-gui

GUI for spikeinterface objects

spikely

A GUI for running popular spike sorting algorithms on extracellular data of any file format.

spikemetrics

Metrics for spike sorting validation/quality control

probeinterface_library

Collection of probe description for probeinterface

spikeinterface-dockerfiles

Collection of spike sorters Docker files

spikewidgets

Python-based widgets for spike sorting and electrophysiology.

SpikeInterface-Hackathon-Edinburgh-May24

Repo for SpikeInterface Hackathon in Edinburgh - May24

spikecomparison

Python-based modules to compare and benchmark spike sorting results.

spikeinterface-pipelines

Collection of standardized analysis pipelines based on SpikeInterface

spikeresults

A collection of notebooks with results obtained with the help of SpikeInterface

Jupyter Notebook

SpikeInterface.github.io

spikeinterface report

Jupyter Notebook

ndx-probeinterface

Extension for neural probes in the probeinterface format to NWB

spikeinterface-events

Material for courses, conferences, and events about SpikeInterface

spikeinterface-airspeed-velocity-benchmarks

Benchmark SpikeInterface performance with Airflow

hybrid_template_library

Library of templates to create hybrid data for spike sorting benchmarks

Jupyter Notebook

spikefeatures

Feature extraction library for extracellular waveforms

test-sv-sorting-curation

Test repo for SortingView curation

SpikeInterface-Training-Edinburgh-May24

Material for user training day of SpikeInterface

Jupyter Notebook