Discover Smithsonian/MD5_tool Open Source project

DPO Cook - 3D Model/Geometry/Texture Processing Server

156

dpo-cook

Mesh conversion tool including glTF/GLB support with Draco mesh compression

dpo-meshsmith

C++

ForestGEO

🌱🌳Web app helping a global network of scientists and forest research sites manage and validate data. Collaboration between the Smithsonian Institution's Forest Global Earth Observatory (ForestGEO), Microsoft, and CodeDay.

The Naval Observatory NOVAS C astrometry library, made better

SuperNOVAS

Compositae-COS-workflow

Perl

dpo-packrat

Data Repository and Workflow Management for 3D data captures, models, and scenes

Remote CLI for the Cook 3D Processing Service

dpo-cook-cli

Digital Archiving of Email Tool

DArcMail

Vagrant launcher for Galaxy

vagrant-galaxy

Shell

sma-data-reduction

Scripts used for SMA data reduction using MIR and CASA.

Jupyter Notebook

edan-schemas

JSON schemas for EDAN

wideband_sw

Software for the new SMA wideband correlator

r2dbe

[Archived Read Only] Design files and software for the ROACH2 VLBI Digital Back-end for the SPT

Dashboard that displays the file validation results in mass digitization projects. Digitization Program Office, OCIO, Smithsonian.

Osprey

System and workflows for the mass georeferencing of museum records using known localities from collections and spatial databases. Digitization Program Office, OCIO

SpatiotemporalMatchingOfAnimalPositionsWithRemotelySensedDataUsingGoogleEarthEngineAndR

Mass-Georeferencing

A repository of simulation material for the ngEHT collaboration

sidora-services

Sidora Ingest

Java

ngehtsim

Files for value added uncertainty analysis supporting EPA coastal wetland NGGI

Coastal-Wetland-NGGI-Sensitivity-Analysis

CCN-Data-Library

The Coastal Carbon Network Data Library: An open-source database featuring carbon data from tidal wetlands around the world

Code for the SWARM VLBI digital back-end

sdbe

Target-enrichment data processing in legumes

Fabaceae_Phylogenomics_workflow

adc_tests

This hosts software for testing and verification of the interim correlator's analog-to-digital converters.

Smithsonian Dataset Cards

dataset-cards

si_publications

ruby connector for EDAN API

edanrb

Ruby

dpo-concierge

Workflow Management and Migration Tool for 3D Data

Beginner Information for learning R

R-Beginner-Tutorial

Instrument Drivers and Applications using PyVisa

RxLab-Equipment

Code to convert SMA data files into FITS-IDI files suitable for importing to CASA

sma2casa

Implementation of a camera trap research information service

sianctapi

A repository for Home Range Analyses

R-HomeRange

Literature review, data, analysis, and report to support EPA's coastal national greenhouse gas inventory, public facing version.

Coastal-Wetland-NGGI-Data-Public

SAS

DPOMD_dashboard

Dashboard to display general and detailed statistics of digitization projects by DPO Mass Digitization, OCIO, Smithsonian

drupal-castle-components

Drupal component library using TailwindCSS and AlpineJS.

Twig

python-graspfile

Python module for reading output and configuration files from TICRA's GRASP, CHAMP and TICRA Tools software

sage

AI alt text prototype

Software to change the spectral resolution of data taken by the Smithsonian Submillimeter Array

SMARechunker

sidora-exhibition

Repo containing the Sidora exhibition modules

MarineGEO Reef Life Survey to Darwin Core R package

rls2dwc

ProjectMirador

patched mirador 2.5.0 instance to allow for canvas level metadata display in info panel

lod-pilot

Workbench for SI's LOD Pilot Project: https://si-confluence.si.edu/display/LOD

Virtual-Barcodes

R/Shiny app to display barcodes for filenames from a database. Digitization Program Office, OCIO

MassDigi-tools

Scripts that support Mass Digitization projects by the Digitization Program Office, OCIO

Repo containing the Sidora workbench modules

SDMinGEE

vagrant-taverna

RockShot

sidora-workbench

Analyses of wildebeest movement data

Introduction_RSF

Collection of scripts to read, scrub, test, clean, and edit geographic data on a massive scale. Digitization Program Office, OCIO

TEMPO-Observations-log

soundburst

DPO-GIS

eMammal_Legacy_Data_Converter

Cat app recreated by Jorge Alberto Serrano Paul for HRA and other institutions. This is the API.

Cat-app-backend-2021

Real-time captioning for Time-based Media (RCTM) project

tune

mpc-public

Repository for the Minor Planet Center's open source software.

2019-06-19-SERC

Query the Smithsonian's Enterprise Digital Asset Network (EDAN) from R. Digitization Program Office, OCIO

EDANr

sma-met-forecast

SMA met forecast generation scripts and tools

R/Shiny app that matches subjects terms to the Getty AAT using keywords or a full text search

Match-Getty-AAT

ETERnity

R package for Evolution of Terrestrial Ecosystems (ETE) Program

datapalooza

Shiny app that matches scientific names to the EPICC taxonomy

EPICC-name-match

QSubGen

A qsub script generation utility for use on the Smithsonian Institution High Performance Cluster.

Python module to query the Smithsonian Institution Open Access API

smithsonian-openaccess

Shiny app to explore issues in occurrence records from a GBIF DwC download

GBIF-Issues-Explorer

swarm-firmware

This repository hosts the MATLAB/Simulink/SystemGenerator/EDK design files and bitcodes for the ROACH2-based SMA Interim Correlator.

MATLAB

ReproducibleResearchInR

zooplanner

si_3d_viewer

Client side python library for communicating with SMA-X (aka Redis).

smax-python

A demonstration UI for supporting researchers using camera trap.

DEPRECATED-sianctdemo

Shiny app that displays basic info of the Shiny server

Shiny-server-info

Breathe-Baltimore

Data and code for the Breathe Baltimore project

Shiny app to visualize and download MarineGEO CPOP data

marinegeo-cpop-dashboard

Addax_DistributionModel

Addax distribution model based on presence-only data

OCR system for easy-to-use structured export of the results. Digitization Program Office, OCIO

DPO_OCR

eMammal Desktop Application available for Windows and MacOS

sidora-xsl

XSLT

eMammalDesktopAppDownload

miseq-16s-metagenomics-workflow

rxlab-utilities

A repository of useful scripts and utilities used by the Receiver Lab

Pipelines between Hydra and Sidora

DEPRECATED-sidora-hydra

XSLT

vagrant-qiime

Vagrant launcher for QIIME vbox

sidora-devops

A utility repository for items related to sidora devops.

Shell

sil-d7-field-rightsstatement-org

This implements a field type to contain a value from rightsstatement.org and display it as text/icon.

Resources and documentation made and compiled the Smithsonian Libraries and Archives' Audiovisual Media Preservation Initiative (AVMPI)

avmpi

Network-Analysis-in-R-with-igraph-Package

Basic graphing of social networks based on proximity data

Cat-app-data-digest

Cat app recreated by Jorge Alberto Serrano Paul for HRA and other institutions. This is data processing.

Barcode software to track locations in the museums

CCRCN-Public-Comment-Addressed

Barcode

Java

collexScrubber

R package with various functions to scrub and enhance collection data

DPO_ML_Images

Repo for code on several projects using ML to extract information from images, excluding OCR

Query EDAN from Python. Digitization Program Office, OCIO

EDAN-python

BCPA analysis of movement data based on Gurarie et al

Behavioural_Change_Point_Analysis

A repository for files and code to share in the SERC biogeochemistry lab.

digest2

GENX_share

Code sharing for GENX

SERC_biogeochem

100

eMammal-Desktop-App-Prototype

Open source repo for the new prototype of the eMammal Desktop App.