ShixiangWang/sigminer.prediction ShixiangWang/sigminer.prediction

  • Stars
    star
    8
  • Rank 2,099,232 (Top 42 %)
  • Language
    R
  • License
    Other
  • Created over 4 years ago
  • Updated over 2 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
ShixiangWang/sigminer.prediction
github

ShixiangWang

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Train and Predict Cancer Subtype with Keras Model based on Mutational Signatures

More Repositories

1

sigminer

🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html
R
142
star
2

pybook

《交互的Python：数据分析入门》
103
star
3

Handbook_of_biostatistic_R

📗handbook of biostatistic and R
HTML
62
star
4

install_GISTIC

Install GISTIC2 by one line code; GISTIC2 docker image
Shell
40
star
5

DoAbsolute

📦 Automate Absolute Copy Number Calling using 'ABSOLUTE' package
R
36
star
6

self-study

My Self-Study Room: keep tidy and lightweight
HTML
30
star
7

Variants2Neoantigen

A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)
Shell
29
star
8

sigflow

Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow
R
26
star
9

masterR

📓R学习笔记与进阶之道
Jupyter Notebook
24
star
10

geek-r-tutorial

极客R：数据分析之道
TeX
23
star
11

sync2gitee

Auto-Sync GitHub Repositories to Gitee
22
star
12

sync-deploy

🔄 shell toolkit for deploying script/command task on remote host, including up/download files, run script on remote
Shell
21
star
13

ezcox

Easily Process a Batch of Cox Models
R
20
star
14

Git-Handbook

Git使用手册
16
star
15

gcap

GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data and absolute copy number profiles. https://shixiangwang.r-universe.dev/gcap
R
15
star
16

r-search-extension

The ultimate search extension for R
JavaScript
15
star
17

copynumber

The "copynumber" R package with support for hg38
R
15
star
18

next-blog

♨️Personal blog website, will not update anymore. https://shixiangwang.github.io is new site
JavaScript
10
star
19

home

王诗翔（Shixiang Wang）的个人网站
HTML
9
star
20

polar

polar: Dots and Their Connections in Polar Coordinate System
R
9
star
21

VSHunter

Capture Copy Number and Mutation Signatures
R
8
star
22

tinyscholar

A Tiny R Package to Get and Show Google Scholar Profile
R
8
star
23

IDConverter

Convert Identifiers in Biological Databases
R
8
star
24

metawho

📦 An R package implementing deft approach for meta analysis
R
7
star
25

flymaps

Convenient keymaps for data science work with Python, R, Markdown and Rmarkdown in VS Code
Shell
7
star
26

regport

Regression Model Processing Port
R
6
star
27

learn-devel-Rpkg

非参解析与R包创建学习实战
R
6
star
28

Linux_Practice

Linux练习题 - 生信入门
6
star
29

shinyapps

My Open-Source Shiny Apps - A Practice for Shiny https://shixiangwang.github.io/shinyapps/
JavaScript
5
star
30

MessageBoard

诗翔的留言板，用于博客评论和交流
HTML
5
star
31

pagedown-academic-cv-template

CSV and Markdown Driven CV, power by Pagedown
HTML
5
star
32

gcap-wes

R
5
star
33

LeetCode

LeetCode题解：使用 R/Python/Go 学习和锻炼算法能力。
R
4
star
34

sigminer-doc

Manual of Genomic Alteration Signature Analysis in R
HTML
4
star
35

ImmuneDR

A Community Curated Immune Resource Database in R format
R
4
star
36

loon

📦 A Python tookit for operating remote host based on SSH
Python
4
star
37

Rlib

Open R Function Library
R
3
star
38

gosub

GoSub: Automatically Submit PBS Files to Free Your Hands
Go
3
star
39

MarkList

Shixiang's Mark List
R
3
star
40

sigminer-book

📖 Extract, analyze and visualize mutational signatures with sigminer
TeX
3
star
41

wfun

Miscellaneous Functions by 'Shixiang Wang'
R
2
star
42

rsra

Download NCBI SRA data
R
2
star
43

ShixiangWang.github.io

https://shixiangwang.netlify.app/
HTML
2
star
44

MLnotes

Machine learning and deep learning/algorithm notes in R or Python
Jupyter Notebook
2
star
45

ezcox-adv-usage

ezcox advanced vignette
HTML
2
star
46

gcaputils

Utils for GCAP package
R
2
star
47

neopeptides

Calculate and explore property indices of peptides for cancer immunotherapy study
R
1
star
48

academictools

Materials and tools for better personal research
1
star
49

CNX

Old Repo of https://github.com/XSLiuLab/Pan-cancer_CNA_signature
R
1
star
50

neopip

neoantigen prediction pipeline
Python
1
star
51

CNVMotif

R
1
star
52

absoluteCNVdata

Pre-compiled absolute CNV data, which can be used for package sigminer/VSHunter and CNV analysis
1
star
53

picgoR

An R API to PicGo
R
1
star
54

codelife

☁️ Keep life simple now
HTML
1
star
55

cellscape

JavaScript
1
star