ShixiangWang/sigminer-book

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ShixiangWang/sigminer-book

ShixiangWang

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📖 Extract, analyze and visualize mutational signatures with sigminer

sigminer

🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html

pybook

《交互的Python：数据分析入门》

Handbook_of_biostatistic_R

📗handbook of biostatistic and R

install_GISTIC

Install GISTIC2 by one line code; GISTIC2 docker image

DoAbsolute

📦 Automate Absolute Copy Number Calling using 'ABSOLUTE' package

self-study

My Self-Study Room: keep tidy and lightweight

Variants2Neoantigen

A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)

sigflow

Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow

masterR

📓R学习笔记与进阶之道

Jupyter Notebook

geek-r-tutorial

极客R：数据分析之道

sync2gitee

Auto-Sync GitHub Repositories to Gitee

sync-deploy

🔄 shell toolkit for deploying script/command task on remote host, including up/download files, run script on remote

ezcox

Easily Process a Batch of Cox Models

Git-Handbook

Git使用手册

gcap

GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data and absolute copy number profiles. https://shixiangwang.r-universe.dev/gcap

r-search-extension

The ultimate search extension for R

copynumber

The "copynumber" R package with support for hg38

next-blog

♨️Personal blog website, will not update anymore. https://shixiangwang.github.io is new site

home

王诗翔（Shixiang Wang）的个人网站

polar

polar: Dots and Their Connections in Polar Coordinate System

VSHunter

Capture Copy Number and Mutation Signatures

tinyscholar

A Tiny R Package to Get and Show Google Scholar Profile

IDConverter

Convert Identifiers in Biological Databases

sigminer.prediction

Train and Predict Cancer Subtype with Keras Model based on Mutational Signatures

metawho

📦 An R package implementing deft approach for meta analysis

flymaps

Convenient keymaps for data science work with Python, R, Markdown and Rmarkdown in VS Code

regport

Regression Model Processing Port

learn-devel-Rpkg

非参解析与R包创建学习实战

Linux_Practice

Linux练习题 - 生信入门

shinyapps

My Open-Source Shiny Apps - A Practice for Shiny https://shixiangwang.github.io/shinyapps/

MessageBoard

诗翔的留言板，用于博客评论和交流

pagedown-academic-cv-template

CSV and Markdown Driven CV, power by Pagedown

gcap-wes

LeetCode

LeetCode题解：使用 R/Python/Go 学习和锻炼算法能力。

sigminer-doc

Manual of Genomic Alteration Signature Analysis in R

ImmuneDR

A Community Curated Immune Resource Database in R format

loon

📦 A Python tookit for operating remote host based on SSH

Rlib

Open R Function Library

gosub

GoSub: Automatically Submit PBS Files to Free Your Hands

MarkList

Shixiang's Mark List

wfun

Miscellaneous Functions by 'Shixiang Wang'

rsra

Download NCBI SRA data

ShixiangWang.github.io

https://shixiangwang.netlify.app/

MLnotes

Machine learning and deep learning/algorithm notes in R or Python

Jupyter Notebook

ezcox-adv-usage

ezcox advanced vignette

gcaputils

Utils for GCAP package

neopeptides

Calculate and explore property indices of peptides for cancer immunotherapy study

academictools

Materials and tools for better personal research

CNX

Old Repo of https://github.com/XSLiuLab/Pan-cancer_CNA_signature

neopip

neoantigen prediction pipeline

CNVMotif

absoluteCNVdata

Pre-compiled absolute CNV data, which can be used for package sigminer/VSHunter and CNV analysis

picgoR

An R API to PicGo

codelife

☁️ Keep life simple now

cellscape