ShixiangWang/academictools

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ShixiangWang/academictools

ShixiangWang

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Materials and tools for better personal research

sigminer

🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html

pybook

《交互的Python：数据分析入门》

Handbook_of_biostatistic_R

📗handbook of biostatistic and R

install_GISTIC

Install GISTIC2 by one line code; GISTIC2 docker image

DoAbsolute

📦 Automate Absolute Copy Number Calling using 'ABSOLUTE' package

self-study

My Self-Study Room: keep tidy and lightweight

Variants2Neoantigen

A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)

sigflow

Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow

masterR

📓R学习笔记与进阶之道

Jupyter Notebook

geek-r-tutorial

极客R：数据分析之道

sync2gitee

Auto-Sync GitHub Repositories to Gitee

sync-deploy

🔄 shell toolkit for deploying script/command task on remote host, including up/download files, run script on remote

ezcox

Easily Process a Batch of Cox Models

Git-Handbook

Git使用手册

gcap

GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data and absolute copy number profiles. https://shixiangwang.r-universe.dev/gcap

r-search-extension

The ultimate search extension for R

copynumber

The "copynumber" R package with support for hg38

next-blog

♨️Personal blog website, will not update anymore. https://shixiangwang.github.io is new site

home

王诗翔（Shixiang Wang）的个人网站

polar

polar: Dots and Their Connections in Polar Coordinate System

VSHunter

Capture Copy Number and Mutation Signatures

tinyscholar

A Tiny R Package to Get and Show Google Scholar Profile

IDConverter

Convert Identifiers in Biological Databases

sigminer.prediction

Train and Predict Cancer Subtype with Keras Model based on Mutational Signatures

metawho

📦 An R package implementing deft approach for meta analysis

flymaps

Convenient keymaps for data science work with Python, R, Markdown and Rmarkdown in VS Code

regport

Regression Model Processing Port

learn-devel-Rpkg

非参解析与R包创建学习实战

Linux_Practice

Linux练习题 - 生信入门

shinyapps

My Open-Source Shiny Apps - A Practice for Shiny https://shixiangwang.github.io/shinyapps/

MessageBoard

诗翔的留言板，用于博客评论和交流

pagedown-academic-cv-template

CSV and Markdown Driven CV, power by Pagedown

gcap-wes

LeetCode

LeetCode题解：使用 R/Python/Go 学习和锻炼算法能力。

sigminer-doc

Manual of Genomic Alteration Signature Analysis in R

ImmuneDR

A Community Curated Immune Resource Database in R format

loon

📦 A Python tookit for operating remote host based on SSH

Rlib

Open R Function Library

gosub

GoSub: Automatically Submit PBS Files to Free Your Hands

MarkList

Shixiang's Mark List

sigminer-book

📖 Extract, analyze and visualize mutational signatures with sigminer

wfun

Miscellaneous Functions by 'Shixiang Wang'

rsra

Download NCBI SRA data

ShixiangWang.github.io

https://shixiangwang.netlify.app/

MLnotes

Machine learning and deep learning/algorithm notes in R or Python

Jupyter Notebook

ezcox-adv-usage

ezcox advanced vignette

gcaputils

Utils for GCAP package

neopeptides

Calculate and explore property indices of peptides for cancer immunotherapy study

CNX

Old Repo of https://github.com/XSLiuLab/Pan-cancer_CNA_signature

neopip

neoantigen prediction pipeline

CNVMotif

absoluteCNVdata

Pre-compiled absolute CNV data, which can be used for package sigminer/VSHunter and CNV analysis

picgoR

An R API to PicGo

codelife

☁️ Keep life simple now

cellscape