ScilifelabDataCentre/pathogens-portal-scripts

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Updated about 1 year ago

ScilifelabDataCentre/pathogens-portal-scripts

ScilifelabDataCentre

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This repository holds the scripts produced for the Swedish Pathogens Portal

lunch-menu

Menu parser for the restaurants near SciLifeLab in Solna and Uppsala

pathogens-portal

Swedish pathogens portal

swefreq

Swedish Frequency resource for genomics website

dds_web

A cloud-based system for the delivery of data from SciLifeLab Facilities to their users (e.g. research group).

dds_cli

The command line interface for access to the Data Delivery System primarily developed by the SciLifeLab Data Centre.

RDM-guidelines

This is the repository for SciLifelab Research Data Management (RDM) guidelines, a central resource to provide information about data management.

precision-medicine-portal-backend

pathogens-portal-visualisations

This repository holds the visualisations produced for the Swedish Pathogens Portal

serve-tutorials

Tutorials for running applications on Scilifelab Serve.

Jupyter Notebook

stackn

SciLifeLab Serve is a platform offering machine learning model serving, data science app hosting (Shiny, Gradio, Streamlit, Dash, etc.), and other tools to life science researchers affiliated with a Swedish research institute.

reference-files

Files to use as reference for e.g. Dockerfiles and Github workflows

dc-dynamic

Annual_report_Bibliometry

This is where the bibliometrics scripts for the annual report will be held. The intention will be to have a folder dedicated to scripts from each year if need be. However, the scripts should be standardised as much as possible for use in each year

web_publication_dashboard

A dashboard for showing publication visualisations in a browser

serve-images

All files related to images used in Serve

dsw-templates

precision-medicine-portal-frontend

React project for the frontend of the Precision Medicine Portal by DC Data Science Node

serve-charts

SciLifeLab Serve charts repository

container-security

Guidelines and resources for security in containers and Kubernetes

Data-Tracker

System for tracking data generated by SciLifeLab facilities.

data.scilifelab.se

SciLifeLab Data Platform

dsw-appendix

More information for DSW KM topics

dash-covid-in-sweden

Dashboard showing the impact of COVID-19 in Sweden: number of cases, admissions to ICU, and deaths.

serve-load-testing

Load testing for SciLifeLab Serve using the Python Locust library.