There are no reviews yet. Be the first to send feedback to the community and the maintainers!
TEPIC
Annotation of genomic regions using transcription factor binding sites and epigenetic dataORNA
Fast in-silico normalization algorithm for NGS dataEpigenomicsTutorial-ISMB2017
Repository for the Epigenomics Tutorial hold at ISMB 2017 in PragueSTARE
TF analysis from epigenetic and Hi-C dataSTITCHIT
Learning gene-specific regulatory elements from epigenetic dataAeron
Alignment, quantification and fusion prediction from long RNA readsEpigenomeAnalysisTutorial-2020
This website contains material for an epigenome analysis tutorial that covers ATAC-seq analysis and integration with TF motifs and gene expressionRAPID
RAPID is a set of tools for the alignment, and analysis of genomic regions with small RNA clusters derived from small RNA sequencing data.SNEEP
SNp Exploration and Analysis using EPigenomics dataTriangulate
Inferring regulators from single cell RNA-seq dataOntologyEval
OntologyEval is an approach that can be used to compare batch effect correction of normalisation methods for cell heterogeneous genome-wide datasets, like RNA-seq. It uses the cell ontology to evaluate whether datasets derived from different cell types are similar to one another.TriplexAligner
A method for sequence based prediction of RNA-DNA triplices.SOS
Automated de novo transcriptome assemblyMASSIF
Improved motif enrichment analysis using protein domain type informationJAMI
Java tool for computing conditional mutual information from large datasetsSingleCellStitchit
Learning enhancer-gene interactions from single cell dataSplitOrfs
A workflow to computationally detect transcripts that could generate several distinct ORFs that match to the same protein. This can be used to find for example nonsense-mediated decay transcripts that make more than one ORF.TFML
RJAMI
R-wrapper for JAMI: Computation of conditional mutual information from large datasetsTFAnalysis
processing and analysis of transcription factor binding sitesCodefinder
Learning translation code between sets of DNA motifsLove Open Source and this site? Check out how you can help us