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SkimLit

In this project, we're going to be putting what we've learned into practice. More specificially, we're going to be replicating the deep learning model behind the 2017 paper [*PubMed 200k RCT: a Dataset for Sequenctial Sentence Classification in Medical Abstracts*](https://arxiv.org/abs/1710.06071). When it was released, the paper presented a new dataset called PubMed 200k RCT which consists of ~200,000 labelled Randomized Controlled Trial (RCT) abstracts. The goal of the dataset was to explore the ability for NLP models to classify sentences which appear in sequential order. In other words, given the abstract of a RCT, what role does each sentence serve in the abstract? ![Skimlit example inputs and outputs](https://raw.githubusercontent.com/mrdbourke/tensorflow-deep-learning/main/images/09-skimlit-overview-input-and-output.png) *Example inputs ([harder to read abstract from PubMed](https://pubmed.ncbi.nlm.nih.gov/28942748/)) and outputs ([easier to read abstract](https://pubmed.ncbi.nlm.nih.gov/32537182/)) of the model we're going to build. The model will take an abstract wall of text and predict the section label each sentence should have.* ### Model Input For example, can we train an NLP model which takes the following input (note: the following sample has had all numerical symbols replaced with "@"): > To investigate the efficacy of @ weeks of daily low-dose oral prednisolone in improving pain , mobility , and systemic low-grade inflammation in the short term and whether the effect would be sustained at @ weeks in older adults with moderate to severe knee osteoarthritis ( OA ). A total of @ patients with primary knee OA were randomized @:@ ; @ received @ mg/day of prednisolone and @ received placebo for @ weeks. Outcome measures included pain reduction and improvement in function scores and systemic inflammation markers. Pain was assessed using the visual analog pain scale ( @-@ mm ). Secondary outcome measures included the Western Ontario and McMaster Universities Osteoarthritis Index scores , patient global assessment ( PGA ) of the severity of knee OA , and @-min walk distance ( @MWD )., Serum levels of interleukin @ ( IL-@ ) , IL-@ , tumor necrosis factor ( TNF ) - , and high-sensitivity C-reactive protein ( hsCRP ) were measured. There was a clinically relevant reduction in the intervention group compared to the placebo group for knee pain , physical function , PGA , and @MWD at @ weeks. The mean difference between treatment arms ( @ % CI ) was @ ( @-@ @ ) , p < @ ; @ ( @-@ @ ) , p < @ ; @ ( @-@ @ ) , p < @ ; and @ ( @-@ @ ) , p < @ , respectively. Further , there was a clinically relevant reduction in the serum levels of IL-@ , IL-@ , TNF - , and hsCRP at @ weeks in the intervention group when compared to the placebo group. These differences remained significant at @ weeks. The Outcome Measures in Rheumatology Clinical Trials-Osteoarthritis Research Society International responder rate was @ % in the intervention group and @ % in the placebo group ( p < @ ). Low-dose oral prednisolone had both a short-term and a longer sustained effect resulting in less knee pain , better physical function , and attenuation of systemic inflammation in older patients with knee OA ( ClinicalTrials.gov identifier NCT@ ). ### Model output And returns the following output: ``` ['###24293578\n', 'OBJECTIVE\tTo investigate the efficacy of @ weeks of daily low-dose oral prednisolone in improving pain , mobility , and systemic low-grade inflammation in the short term and whether the effect would be sustained at @ weeks in older adults with moderate to severe knee osteoarthritis ( OA ) .\n', 'METHODS\tA total of @ patients with primary knee OA were randomized @:@ ; @ received @ mg/day of prednisolone and @ received placebo for @ weeks .\n', 'METHODS\tOutcome measures included pain reduction and improvement in function scores and systemic inflammation markers .\n', 'METHODS\tPain was assessed using the visual analog pain scale ( @-@ mm ) .\n', 'METHODS\tSecondary outcome measures included the Western Ontario and McMaster Universities Osteoarthritis Index scores , patient global assessment ( PGA ) of the severity of knee OA , and @-min walk distance ( @MWD ) .\n', 'METHODS\tSerum levels of interleukin @ ( IL-@ ) , IL-@ , tumor necrosis factor ( TNF ) - , and high-sensitivity C-reactive protein ( hsCRP ) were measured .\n', 'RESULTS\tThere was a clinically relevant reduction in the intervention group compared to the placebo group for knee pain , physical function , PGA , and @MWD at @ weeks .\n', 'RESULTS\tThe mean difference between treatment arms ( @ % CI ) was @ ( @-@ @ ) , p < @ ; @ ( @-@ @ ) , p < @ ; @ ( @-@ @ ) , p < @ ; and @ ( @-@ @ ) , p < @ , respectively .\n', 'RESULTS\tFurther , there was a clinically relevant reduction in the serum levels of IL-@ , IL-@ , TNF - , and hsCRP at @ weeks in the intervention group when compared to the placebo group .\n', 'RESULTS\tThese differences remained significant at @ weeks .\n', 'RESULTS\tThe Outcome Measures in Rheumatology Clinical Trials-Osteoarthritis Research Society International responder rate was @ % in the intervention group and @ % in the placebo group ( p < @ ) .\n', 'CONCLUSIONS\tLow-dose oral prednisolone had both a short-term and a longer sustained effect resulting in less knee pain , better physical function , and attenuation of systemic inflammation in older patients with knee OA ( ClinicalTrials.gov identifier NCT@ ) .\n', '\n'] ```

Saurabh7Goku/END_TO_END-Chest-Cancer-Detection-using-MlFLow-DVC

Saurabh7Goku

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