SamStudio8/reticulatus

Stars
68
Rank 454,981 (Top 10 %)
Language
Python
License
MIT License
Created over 5 years ago
Updated almost 3 years ago

SamStudio8/reticulatus

SamStudio8

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A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads

chitin

chitin: an awful shell for awful bioinformaticians

majora2

Malleable All-seeing Journal Of Research Artifacts

naaaavi

Naming avoiding ambiguity automatically assigning valid identifiers

gretel

An algorithm for recovering haplotypes from metagenomes

hansel

A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence

goldilocks

Locating genetic regions that are "just right"

dehumanizer

rapidly rid reads of horrid humans

elan-nextflow

for data flowing to birmingham

ocarina2

on-computer agent (for) remembering input actions

book-notes

ffurf

a very simple python package for defining and filling configurations

triage

A todo manager for the disaster that is your day

hootsim

Extensible agent-based model simulator written in C++

elan-ena-nextflow

gretel-test

assert-changelog

dbot-stats

Statistics module for award winning depressionbot

sunblock

Do not stare directly into the Sun Grid Engine

frontier-dissertation

Undergraduate Dissertation Project

IYG-Web

"Inside Your Genome" Web App

hootsim2000

A sequel to the extensible agent event based simulator, Hootsim

IYG-Import

Python Data Importer for IYG Web

Mountain

A work in progress collection of simple but possibly useful genetics tools.

2018-01-23-samstudio8

pyena

a hilariously simple script to send raw reads to ena

reticulatus-containers

a box to put snakes in

frontier

Interfaces for the reading, storage and retrieval of large machine learning data sets for use with scikit-learn

samstudio8.github.io.off

samstudio8.github.io

EulerFortran

First foray in to Fortran

IYG-Web-Lib

Perl Library for IYG Web

swell

dotfiles-2.0

Things I need on my adventures against computers, deployed in a better way than last time