Sage-Bionetworks-Workflows/nf-dcqc-poc

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Sage-Bionetworks-Workflows/nf-dcqc-poc

Sage-Bionetworks-Workflows

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Proof of concept demonstrating a Nextflow workflow orchestrated by a Python script for quality control

dockstore-workflow-rnaseq

Common Workflow Language

cwl-tool-synapseclient

CWL interface to the Synapse command line.

Common Workflow Language

py-orca

Python package for connecting services and building data pipelines

nextflow-infra

AWS CloudFormation templates for deploying Nextflow infrastructure

py-dcqc

Python package for performing quality control (QC) for data coordination (DC)

sagetasks

Python library for building ETL pipelines involving Synapse and data processing workflows

cwl-tool-template

A template project for setting up a containerized CWL Tool.

nf-genie

Nextflow workflow for main GENIE processing

nf-syn

Nextflow plugin for Synapse

cwl-workflow-template

A template project for a CWL workflow

nf-dcqc

Nextflow Workflow for Data Coordination Quality Control

dockstore-tool-picardtools

Dockerized container and CWL Tool for Picard Tools

Common Workflow Language

dockstore-workflow-scrna

Process 10X Genomics ssRNA data to produce aggregated gene count table