There are no reviews yet. Be the first to send feedback to the community and the maintainers!
drop_it_like_its_hot_r
Compilation of R heatmap functions.motif_scraper
Tool for finding matches to degenerate sequence motifs in FASTA files.vcf2snpduo
Simple python script for converting a valid, multi-sample VCF file into a SNPduo compatible format.snpduo
Repository for the snpduo command-line tool. The tool is designed to calculate identity-by-state in large SNP genotyping datasets. Originally developed in the lab of Dr. Jonathan Pevsner at the Kennedy Krieger Institute in Baltimore. Publication PMID: 19696932.count_dual_indexes
C++ program to take the FASTQ files of two indexes and count the index pairs.wustl_ris_docker_image_builds
genbankFeatureFasta2Bed
Simple python script to convert the exported features for a genbank record (FASTA format) into a 5 column BED file.fastqSol2Phred
Simple program that converts FASTQ files in Solexa quality offset (QUAL+64) to a FASTQ file with Phred/Sanger offset (QUAL+33).fastq_scrubber
Really hacky way to remove adapters from NGS while keeping reads in order. Recommend alt strategy with cutadapt instead.snpduoweb
Repository for the web-based version / visualization engine for the SNPduoWeb tool. Designed to visualize identity-by-state in high-density snp data. Originally developed in the lab of Dr. Jonathan Pevsner at the Kennedy Krieger Institute in Baltimore. Publication PMID: 19696932.Love Open Source and this site? Check out how you can help us